Lsuf023176.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402564.1:10177247-10177834[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-13 2.9e-10 40.6 0.1 1 39 9 47 9 53 0.92
Sequence Information
- Coding Sequence
- ATGCCTCCCGAACGGGCATTGTGGTCAGAAGACGATCTGATCGCAGCTGTTAGAGCCGTACAAAGAGGAACTTTGAGTACGTATAAGGCTGCAGAGAGATATAAGGTTCCTAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGTTTAAAGAAAAGATTAGGACGTAAACCTATATTAAATGATGAAGAGGAAGCTCAACTTGTGCAATGGATAATCCGGTATTCTGAAATGGGCTTGCCTATGACACCAAGAATATTGCGTCGATTGGTGTATAAACATTGTGAGCAAAATAATATAAAACACAATTTTAATGATGAGGGCAAACGCGCAGGCAAAGACTGGTTCAAAGCGTTCATGAAAAGACACCATGAAATATCCGTAAGAAAAGCGCAATTCATGAACCCAGCTAGAGCCCAAAAGATAAATAAATTTATTGTTGATGACCATTTTAAAAAACTGAGAGATATCTACGATAAATTTGACTTATTTGATGTGATCATTCCGAGAAAATTTATAATATGGATGAGAAAGAATGCCGTCTTACTATCCACCACCAGCAAAGTGTTTTGGCCAAAAAAGGGCTAA
- Protein Sequence
- MPPERALWSEDDLIAAVRAVQRGTLSTYKAAERYKVPRRTIRNHLQSGSLKKRLGRKPILNDEEEAQLVQWIIRYSEMGLPMTPRILRRLVYKHCEQNNIKHNFNDEGKRAGKDWFKAFMKRHHEISVRKAQFMNPARAQKINKFIVDDHFKKLRDIYDKFDLFDVIIPRKFIIWMRKNAVLLSTTSKVFWPKKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00382500; iTF_00856525; iTF_00826832; iTF_00709113; iTF_00667289; iTF_01158649; iTF_01564510;
- 90% Identity
- iTF_00049829;
- 80% Identity
- -