Eoch028575.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- -
- Assembly
- GCA_949629135.1
- Location
- OX451407.1:6574068-6574583[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-12 6.1e-10 39.7 0.1 2 39 10 47 9 52 0.94
Sequence Information
- Coding Sequence
- ATGCCTCCTAAACGGGCACTGTGGTCAGACGACGATCTGATCGCAGCTGTTAGAGCAGTACAAAGAGGAACTTTGAGTACGTATAAGGCTGCAGAGAGATATAAGGTTCCTAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGTTTAAAGAAAAGTTTGGGACGTAAACCTATATTAAATGATGAAGAGGAAGCTCAACTTGTGCAAAGGATAATCCGGTATTCTGAAATGGGCTTGCCTGTGACACCAAGAATATTGCGTCGATTGGTGTATAAATATTGTgagcaaaataatataaagcacAATTTTAATGATCAGGGCAAACGCGCAGGCGAAGACTGGTTCAAAGCGTTCATGAAAAGACAACCTGAAATATCCGTAAGAAAAGCGGAATTCATGAACCCAGCTAGAGCCCAAAAGCTAAATAAAGTTATTGTTGATGACCATTTTAAAAAACTGAGAGATATCTACGATAAATTTGACTTATATGATCATCCCGAAGAAAATTTATAA
- Protein Sequence
- MPPKRALWSDDDLIAAVRAVQRGTLSTYKAAERYKVPRRTIRNHLQSGSLKKSLGRKPILNDEEEAQLVQRIIRYSEMGLPVTPRILRRLVYKYCEQNNIKHNFNDQGKRAGEDWFKAFMKRQPEISVRKAEFMNPARAQKLNKVIVDDHFKKLRDIYDKFDLYDHPEENL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856526;
- 90% Identity
- iTF_00049829;
- 80% Identity
- -