Aoxy018879.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- -
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000290.1:29771-30355[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-12 2e-09 37.4 0.1 2 39 10 47 9 53 0.91 2 2 3.6 3.2e+03 -1.6 0.0 17 23 126 132 123 132 0.84
Sequence Information
- Coding Sequence
- ATGCCTCCCAAACGGGCATTGTGGTCAGAAAACGATCTGATCGCAGCTGTTAGAGCAGTACAAAGAGGAACTTTGAGTACGTATAAGGCTGCAGAGAGATATAAGGTTCCAAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGTTTAAAGAAAAGATTGGGACGTAAACCTATATTAAATGATGAAGAGGAAGCTCAACTTGTGCAAAGGATAATCCGGTATTCTGAAATGGGCTTGCCTGTGACACCAAGAATATTGCGTCGATTGGTGTATAAATATTGTgagcaaaataatataaaacacaattttaatgATGAGGGCAAACGCGCAGGCAAAGACTGGTTCAAAGCGTTCATGAAAAGACACCATGAAATATCAATAAGAAAAGCGCAATTCATGAACCCAGCTAGAGCCCAAAAGCTAAATAAATTTATCGTTGATGACCATTTTAAAAAACTGAGAGATATCTACGATAAATTTGACTTATATGATCATCCcgagaaaatttataatatggaTGAGAAAGGATGCCGGTCTCACTATCCACCACCAGCAAAGTGTTTTGGCCAAAAAAGGGGCTAA
- Protein Sequence
- MPPKRALWSENDLIAAVRAVQRGTLSTYKAAERYKVPRRTIRNHLQSGSLKKRLGRKPILNDEEEAQLVQRIIRYSEMGLPVTPRILRRLVYKYCEQNNIKHNFNDEGKRAGKDWFKAFMKRHHEISIRKAQFMNPARAQKLNKFIVDDHFKKLRDIYDKFDLYDHPEKIYNMDEKGCRSHYPPPAKCFGQKRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388025;
- 90% Identity
- iTF_01564516; iTF_00856525; iTF_00856526; iTF_00667289; iTF_00709113;
- 80% Identity
- -