Lhir004983.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947359425.1
- Location
- OX375796.1:5856291-5860714[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-114 1.7e-109 366.4 32.2 1 300 46 341 46 341 0.94 2 2 0.028 8.3e+02 -0.2 4.2 121 170 340 389 339 412 0.70
Sequence Information
- Coding Sequence
- ATGACGGAAAGTGGTGATTGTCTAGAAATAGAAGGAGTTACGAAATCGGAGAGCACTACGGATGGGGATGGTTTACGAAGTTCAACTGCTTCGAATGATGTTATTAACAAGTTAATGCAAAATAGTAGTCATGAAGCGGAAGCAAGATTGTGGGCCAAAAGGCAAGCAAGAGCTGAGGCTAGGGAAATACGTATGCGGGAATTGGAAAGACAGCAAAAGGAGCAAGAGGAGAATGCGGATAGACAGTTTGATATGTTGGCGGAACCGACCATTAGGCCTGGAAGACCTTCCACTACTGGAAGCAGGTATTTATCCAGTAGTAGAAGAAGCTCTGAAGACTCGCTGGAAGATGGGGGTAGTCTTAGAGATTTGAAGAATGAACTTAAAGAATGTGAAGAAAAGTTTCGAAAAGCAATGATTGCCAATGCCCAATTAGACAACGACAAGACTTCTCAGACATACCAACTGGAATTGTTTAAAGACAGATTAGAAGAATTAGAGGAAGAACAGTCTCAATTAAAACGTGAATACCGTGAAAAGTGTCGTGAACATGATCAATTGAAACGTTTATGTGCAAAATTGAAAGACGATTTGGCTGTGACAACTGCTGAACTGGAAGAACGAGACCAACTCATTAGTGAAAAAGGTTTAGTGATCGTCGGTGACAATTCCATTAATGATGAAGAACAAAGAAATGGTGACATAAGTATCAATAGTATAGTTACACCTAAAAAAGCTTTAGTTAGTGCAGAAAATGCCCAATTGTTAGAAAGTGCGGGTGAAGGCAATTTAGACGTACGATTGGCCAAGTTCCAGAAAGAAAAAAGTGAATTACAAGATCAAATTAGTCATTTGAAATTAGAATTGGAGGAGGAGAGGAGTAAACGAAAAAGATCAACAGGAAATGCAACAAATGGACCTATATCGGAAGATTTAGATGAAATTGATATTCAAAGAGAAGCAAGTAAGCAACTTGGAGATTATAAATTTCGTGCGCAAAAGGCTGAACAAGATGTTGCTACTTTACAAGCTACAGTTGCAAGATTAGAAAGCCAAGTTATTAGGTATAAAGCTGCTGCAGAACTTTCAGAAAAAGCTGAAGAGGGTTTGAAAGCAGAAAAAAGAAAATTGCAAAGAGAGGCGAGGGAAGCTCAGAGCAGAGCTGAAGAATTGGAAACTTCAAACACACATCTTTTGAAGCGTTTGGATAAATTGAAAAACGCCAAATCAGCTCTTTTGAAGGAACTTTGA
- Protein Sequence
- MTESGDCLEIEGVTKSESTTDGDGLRSSTASNDVINKLMQNSSHEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPTIRPGRPSTTGSRYLSSSRRSSEDSLEDGGSLRDLKNELKECEEKFRKAMIANAQLDNDKTSQTYQLELFKDRLEELEEEQSQLKREYREKCREHDQLKRLCAKLKDDLAVTTAELEERDQLISEKGLVIVGDNSINDEEQRNGDISINSIVTPKKALVSAENAQLLESAGEGNLDVRLAKFQKEKSELQDQISHLKLELEEERSKRKRSTGNATNGPISEDLDEIDIQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAELSEKAEEGLKAEKRKLQREAREAQSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415112;
- 90% Identity
- -
- 80% Identity
- -