Lwla011794.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388035.1:27653052-27654056[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-10 6.9e-08 32.7 0.0 3 37 17 51 15 57 0.93 2 2 1.1 4.4e+02 1.4 0.0 22 30 142 150 126 151 0.74
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATGAAAGAACGACACTACGAGCATCATGGAGTGCGGACGACTTAGACAAAGCCATGCGTAGTGTCCTAAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAAACTTTGGTATACCGTCTCGAACTCTAAGAAGACACATTTTATCAGGAAAATCAAAGGGCCCTCTAGGACGCAAACCAGTATTTTCAGTAGAACATGAAAAAAAACTGGTTGCCCATATAAAGAAATTGGAAAAAGTTGGATTTGCCCCTGACAGAAAAGATGTAAAAGAAATGGCATTTCAACTAGCTAAGAAACTTAATATTAAAAACCCATTTTCAACAAGTTCAGAATCAGCTGGAAATGTATGGTTTTCAGGATTCATGGCTCGTAACTCTGAATTAAGTCAAAGAAAATCAGAAGGCTTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAAAGATGTACAGGATTTTTTTGATTTACTAGCCAAAATCTACGAAGAAAATGATTTTGCAAATCACCCTGAAGATATTTTCAATATGGACGAATCCGGCATACAAGTGAACAACAAGCCAGGTAGAGTGATTGCCACAAAGGGAGCCAAAGATGTCTACACGCTCACTAGTTCTGAAAAGGGTGAAAACGTAACAGTGATTGCTTGTTGTAATGCTCAAGGTGGGGCGTTTTGTAATGTGGTCGTTGGCTAA
- Protein Sequence
- MSRKYERTTLRASWSADDLDKAMRSVLSKVMGVNEASRNFGIPSRTLRRHILSGKSKGPLGRKPVFSVEHEKKLVAHIKKLEKVGFAPDRKDVKEMAFQLAKKLNIKNPFSTSSESAGNVWFSGFMARNSELSQRKSEGLSLARAYGVNRKDVQDFFDLLAKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVYTLTSSEKGENVTVIACCNAQGGAFCNVVVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01282209; iTF_01282152; iTF_00373867; iTF_00071322; iTF_00745561; iTF_01358812;
- 90% Identity
- iTF_00071322;
- 80% Identity
- -