Spin002729.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387637.1:9526702-9527403[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-11 1.8e-08 34.6 0.0 3 38 17 52 15 58 0.92 2 2 0.3 4.2e+02 1.4 0.0 22 30 142 150 126 151 0.74
Sequence Information
- Coding Sequence
- ATGTCTCGAAAGTATCATAGAACGACACTACGAGCATCATGGAGTGCAGACGACTTAAACAAAGCCATGCATAGTGTAGTTAGTAAAGAAATGGGTGTTAATAAGGCATCCAGAAACTTTGGCATACCGTCTCGAGCCCTTAGAAGGCACATTTCAGCGGGATCTTCAAAAGGCCCTCTAAGACGCAAGCCTGTATTTTCTATAGGACATGAAAAAAAACTGGTTGCCCATATAAAGAATTTGGAAAAAGTTGGATTTGCTCCTAATAGAAAGGATGTAAAAGAAATGGCATTTCAACTAGCTAAGGAACTCAATATTAAAAATCCATTTTCAGAAAGTTCTGAATCAGCTGGAAATGTATGGTTTTCAAGCTTCATGGCTCGCAATTCAGAATTAAGTCAAAGGAAATCGGAAGGGTTGTCACTGGCTAGAGCTTATGGAGTTAATAGAAAGGATGTGCAGGATTTTTTCGAGTTACTAGCCAAAATCTACGAAGAGAATGATTTCGCTAATCACCCCGAAGACATCTTCAACATGGAAGAGTCCAGTATACAGGTTAACAACAAGCCAGGAAAAGTAATCGCCGCAAAGGGAGCCAAAGATGTCTACCCGCTGACTAGCTGCGAAAAGGGTGAAAATATTACGGTAATAGCTTGCTGTAATTGCTCAAGGAAACTTCATTCCGCCAGTTTTAATATATAA
- Protein Sequence
- MSRKYHRTTLRASWSADDLNKAMHSVVSKEMGVNKASRNFGIPSRALRRHISAGSSKGPLRRKPVFSIGHEKKLVAHIKNLEKVGFAPNRKDVKEMAFQLAKELNIKNPFSESSESAGNVWFSSFMARNSELSQRKSEGLSLARAYGVNRKDVQDFFELLAKIYEENDFANHPEDIFNMEESSIQVNNKPGKVIAAKGAKDVYPLTSCEKGENITVIACCNCSRKLHSASFNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00851703;
- 90% Identity
- -
- 80% Identity
- -