Lole044233.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493415.1:8704609-8708155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.4e-05 0.0058 18.4 4.3 1 23 10 32 10 33 0.96 2 24 1.1e-05 0.0014 20.4 0.8 1 23 37 60 37 60 0.94 3 24 0.014 1.9 10.5 0.6 2 23 63 85 62 85 0.95 4 24 0.055 7.4 8.7 1.5 2 20 91 109 90 114 0.91 5 24 0.019 2.6 10.1 2.8 2 23 159 181 158 181 0.91 6 24 0.43 57 5.9 0.3 2 23 210 232 209 232 0.94 7 24 0.00044 0.059 15.3 0.0 1 23 254 277 254 277 0.92 8 24 8.6e-05 0.011 17.5 0.9 1 23 282 305 282 305 0.94 9 24 1.9 2.5e+02 3.8 0.1 1 13 311 323 311 326 0.84 10 24 0.0002 0.026 16.4 2.3 1 23 360 382 360 382 0.96 11 24 0.03 4.1 9.5 0.1 3 23 411 432 411 432 0.96 12 24 0.0074 0.99 11.4 1.9 1 23 452 475 452 475 0.96 13 24 3.1e-05 0.0042 18.9 0.5 1 23 480 503 480 503 0.96 14 24 0.0012 0.16 14.0 0.8 1 23 508 531 508 531 0.96 15 24 0.0014 0.19 13.7 1.3 3 23 535 556 534 556 0.94 16 24 0.11 15 7.7 3.5 2 21 564 583 563 584 0.94 17 24 0.0048 0.64 12.0 3.1 1 23 638 661 638 661 0.95 18 24 0.73 97 5.2 0.0 2 23 734 757 733 757 0.94 19 24 1.5e-05 0.002 19.9 0.1 3 23 764 785 763 785 0.94 20 24 0.0026 0.35 12.8 2.8 2 23 790 812 789 812 0.94 21 24 0.0083 1.1 11.3 5.1 1 23 817 840 817 840 0.96 22 24 1.8e-05 0.0024 19.6 5.0 1 23 844 867 844 867 0.97 23 24 0.00021 0.028 16.3 0.3 2 23 874 895 873 895 0.96 24 24 7.6e-06 0.001 20.8 0.6 1 23 901 923 901 923 0.98
Sequence Information
- Coding Sequence
- ATGAATACCGATCATCCTAATAACAGCTTTGAGTGTTCCGAATGTAAAAAGACGTTTAACAAAAAGAGAGATTTAGATTCTCACTTAAGATCCCACCATAAGAAATATCATACCTGTACTAAATGTGGTGAAACGTTCCCTACGAACTCCGCGCTTCAGATTCATAGGTCGAACGCTCATTCTTCAACATGCAACATCTGCTTCAAAGTGTTTTCGTCAGACGGCAAGAGATTAGCTCATTTAAAATCGGACCATGATACTGAACAAAGCAAATGTGGGTTCTGCAATAAAGTTCTAACAACAAAACAAGCGTTTATAAGGCATGCTGCAAATTGCGAACATAAACCTAAGTTAGAAACCGTCGTAATAGATGACGAGGAAAAAAAGATGTCCGTCAAAGAAATAAGAAATAGCTTGGCAGCCATCTTTAACATGACCACCGCACTTCCTTTCAAGTTCTTTATGAATAGGTTACGGTGCTTCTATTGCACAAGAGACTTTACCACTTGTGAGGAATTAAAGGAACATTCGCTGAACGAACATCCTCATTGCGATATATCATTTAAGTCTATGAGGTTAAGGAACAGATATGACGGTGTTCAAATCAAGGTTGATACTTCTTCTCTGTCCTGCAGACTATGCCACATCGCGTTGCAGGATCTGAGCGATTTGATCGACCATTTGACCAAAGAACATAAGGTTAAATGCGATATGACTGTCGAGAGTAATCTACAGCCGTTCAAACTGATCAAAGACAACTATCCTTGTCCCATTTGCGGGGAAGTCTACAGATATTTCGGCCTTTTACTGAAGCATGTTAGTGCATCTCACAGTGGCAATAAGCACATATGCATGTATTGCGGAAAAGCTTTCAGAACGGATCCTAATCTTAGAGCTCACGTGTCCAGGCGACACAAAACCGCTGACAATCACAAGTGTACTACTTGCGATCTACAATTTCCTACAATTGATGGTCTGCCAGGACCGTACGAAGGCTGTACCTCTGAGCGACGACGGAAAAACTTGAAAATACTGTTCAACCACACGACAGTCATGCCTTTTAAATGGCGAGGAAAATACCTTTGCTTCTACTGCGGAAAAAACTATACAGATTACGCAGAGTTTAGAAAACACACGAAATCCCACGGACTTTGCACCACTAAAGATTACTCCCTGAAACTTATCAAAGGGAATAACGTAGAAATTAAAATCGACGTCTCAGAGATCGGTTGTGACATCTGCAATGAACCCTTCAGTAGATTCGAGGAAATAATCGATCATTTGATCTCGAAACATAATATGGAATACAACAAAAACATTGATATACCCTTCCAGGAGTACCGATTAGTGGATTTTCGATGTTTGCACTGCGAAGAACAGTTTTCTTACTTCGGATATTTAGTTAAACATGTCAACAACGTTCACCCACAGAACTGCTTCATTTGCGATGATTGTGGAGTTACATTCAACAAGAAAAGGGATCTGTCAATACATTTGAGGAATTATCACAGACAAGGCGGATACCCATGCGATTTGTGCTTGAAGAACTTCGAAACACGACTTATGTTACGGAGGCATCAAAATAATATGCATTTTAGGCACTGCAAGAGCTGTGGTTTACGTTTCGCGTCTCTTTCCCTCTTACAAAAACACGTCCAACTCGATCATCCCCAAAACGAGGGCAATATGAAGTGTAGTTACTGCTCCAAGGAGTTTCACACCTGTTTAGGTTTAAAACAGCATATAAGCAAATGTAAAGTCAAAATCATTTCTCAGGTCGAACCCCAAACTTCGTTTTTGAACGACAGTAACATAGAAccgaagaaaaaacaaaatatcctCCAAATAAGACAGAATATACAGTGCGTACTGAACATGTCGACTGCTGTGCCTTTTAAATTCTTTTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTCGTAGAATTTGACGAGTTACGCCATCATACTACTGTAGAGCACCCCGTGTGCGATTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTTAAAGTCGATATTTCTACTTTAGCTTGCAAAATATGTTGCCTTCCTATGTCTAACTTAGAAGATTTGATCAGTCATTTAATAGGAGAACATAAGGCGAACTATGATACGTCAATTTCTGGCTGTTTGGAACCGTTCAGGGTTATAAAAGACAACATGCCCTGTCCTATATGCCCGGACACCGTTTTCCGATACTTTGGGATTTTGCTTCGGCATATGAACTCCGAACATAGTAACAATAATCGAATATGTGACTTTTGTGGTCGGAGTTTCCGAAATGCTGCTAATCTCAACGTGCATATAACATACGCTCATACAGGTTCCTGCGAATGTGATATTTGCGGTGTCAAATACAAGAACCAATGGTGTTTAGCGCGACATAGAGCGAGAACACACGACGCTAAAGACCATAAATGCCCAAAATGTCCAGAGCAGTTCCAATCAcagtaccataaacaaaaacatttaataaaaatgcatAATGTTGGCCACAAATGTAGTTATTGCGGTAAAATGTTCACTAGGAACTCCTTTATGAAAGACCATGTGAGGAGAACACATTTGAAGGAAAAAAACATTCCATGTTCTATTTGCAATGAGAAGTTCTTCGATAATTATCTTCTAAGGATGCATATGGTAAAACACGAGGGTGACAGAAAATTCAGTTGTACTGTGTGTGGCAAAGCCTTTTTGAGACGTAGTAATTTGAGCTCGCATATGGAAATGCATAAGAAGTATGGACATGTGCAGGTACAGATTTAA
- Protein Sequence
- MNTDHPNNSFECSECKKTFNKKRDLDSHLRSHHKKYHTCTKCGETFPTNSALQIHRSNAHSSTCNICFKVFSSDGKRLAHLKSDHDTEQSKCGFCNKVLTTKQAFIRHAANCEHKPKLETVVIDDEEKKMSVKEIRNSLAAIFNMTTALPFKFFMNRLRCFYCTRDFTTCEELKEHSLNEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCHIALQDLSDLIDHLTKEHKVKCDMTVESNLQPFKLIKDNYPCPICGEVYRYFGLLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHVSRRHKTADNHKCTTCDLQFPTIDGLPGPYEGCTSERRRKNLKILFNHTTVMPFKWRGKYLCFYCGKNYTDYAEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQLDHPQNEGNMKCSYCSKEFHTCLGLKQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTTVEHPVCDLKSKCMKKCKGERIAVKVDISTLACKICCLPMSNLEDLISHLIGEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037072; iTF_00952901;
- 90% Identity
- -
- 80% Identity
- -