Ipal002981.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- bab1
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000182.1:45437-47256[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4e-15 3e-12 45.7 0.1 3 45 357 399 355 399 0.92 2 3 0.17 2.1e+02 1.4 0.4 6 17 468 480 466 481 0.80 3 3 1 1.3e+03 -1.2 0.0 28 40 491 503 491 506 0.85
Sequence Information
- Coding Sequence
- ATGTGCGCGGCCCAGCAATATTGTCTACGATGGAACAATCATCGCTCTAATTTATTGACTGTTTTCGATGAACTCCTTCAAAATGAGGCATTTACTGATGTTACTCTAGCTTGTGACGGTGGTGGACCTATCAAGTGTCATCGTATGGTTCTAGCAGCATGTTCaccatattttcaaaatcttttCACCGATCTACCATGTAAACaccctgttgttgttttaaaagacGTTAAATATGCCGAAATTAAGGCAATACTGGAATATATGTATCGAGGTGAAGTGAATGTTGCCCAAGATCAATTAGCTGCCCTACTAAAAGTAGCTGAAGCACTCAAGGTTAAAGGTTTGGTTGAAGAAAATCGTTCAACAGGATCAAGTTTTTCGAGTCGTGAAGATGAACCAATGGATCAATCACCAACTGGCATGTCAACATCAAATCAAAACGTacatagtagtagtagtaatcaATCGCCACCACATTCAACAAACACTCATTATAAGAATCCCTATAGTAGTATTTATTCAGGCAAGTCGAGTAGTAGTGAACGCGGAGGATCAAGAATGAATTTACCTTTATGGGCAGTGCCTGGTTTACCAATGCCACCTAGTTCTGTTCCTAATCAAAACCATCCACATACGGCAGCAACAGCTGCCGCAATGCTCAGCAGTTGTTATGAAGTAGCCAGTGATATGTCGCCATTAAGAAGGAAGAAATTATCAAGTCTTTTGATGAATCGAGATACACCCATTTTAAGGACGGTACTAGGCCAAGGGCAAGCAGACTCCTCGCAACCTGTTAGTTTGGTTTGTCACCCGGACAGTCATGAACAGCAATCGAATGGATCCGATCAGGATCGTATTGAAAAACATATGAAAAATGAACCTTCAGAAGATGCTCAATCACCTTATACTGATTTTACTGTAATGAATGATGAAGAAGAGAAATCAAAACTTGCCATACCCTCGTCATCACCTCAGTCTTATTCAAATGAGATGCGTGGCTCTGGAATCGCCACCTACGTTCCAACACAAAAACCTGAATGGAAACGTTATAAGCAATATACAAGAAATGATATTATGTCAGCTATAGAAGCAGTACGGAATGGAATGTCAGCATTACAAGCTGCACGAAAATATGGAGTACCCTCTCGGACTTTGTACGATAAAGTTAAAAAACTAGGAATAACTACAAGTAGACCATTTAAAAGAGGATCAAATGGTAGTCCTGCATGTTTCCCATATGGTATAAGTGGTACAGGTTCCCCTTATAGTGGCCATTTATCAGAGAATGATGATCCaccaactaataataatacatcatTATTAGATGCGACATTTTTACAGCATGCTTTTGAAAGTAGAGGCGGTGAAGATCGGGAAGCTTTAGCTGCAATGGCTGTTGCCGCTGCTGCTCATGCTGTTGTCTCCGGTCATTCAACAAGTCCTCCAAGTCATGGTCCGACTAGCCCAATTCCAAGTCCAACATTAATGAAATATATGCGACAGAATAGTATGACACCATCACCAGCACCAGGTAGTGATCATCAACATAGTGAAACAAATGGTAGTTCAGAACGGGAAcgtgatgatgaagatgatcaAGTTGAAGATTTATCAGTTGGTCGAAAACAAGAATCTCGTGTTATTATGCCACCAATGAATCAAGTATCAACAATTatgaaaaaagaagaattattaaaagatatgATTAAAGAGGAAGCTAGAAGGGAGGTAAGCGTTGATGAAACCGAGTAA
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACDGGGPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYAEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSTGSSFSSREDEPMDQSPTGMSTSNQNVHSSSSNQSPPHSTNTHYKNPYSSIYSGKSSSSERGGSRMNLPLWAVPGLPMPPSSVPNQNHPHTAATAAAMLSSCYEVASDMSPLRRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSHEQQSNGSDQDRIEKHMKNEPSEDAQSPYTDFTVMNDEEEKSKLAIPSSSPQSYSNEMRGSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSPACFPYGISGTGSPYSGHLSENDDPPTNNNTSLLDATFLQHAFESRGGEDREALAAMAVAAAAHAVVSGHSTSPPSHGPTSPIPSPTLMKYMRQNSMTPSPAPGSDHQHSETNGSSERERDDEDDQVEDLSVGRKQESRVIMPPMNQVSTIMKKEELLKDMIKEEARREVSVDETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01566165;
- 80% Identity
- iTF_00841947;