Basic Information

Insect: Ischnus inquisitorius
Gene Symbol: Snai1
Assembly: GCA_963924025.1
Location: OZ001244.1:7398580-7401829[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.9 2.4e+02 2.7 0.3 2 17 67 82 66 83 0.84

2 13 0.00054 0.045 14.5 0.1 1 23 258 280 258 280 0.95

3 13 2.9e-05 0.0025 18.5 1.2 1 23 288 310 288 310 0.98

4 13 4.2e-06 0.00035 21.1 0.3 2 23 318 339 317 339 0.97

5 13 4.1e-06 0.00034 21.1 0.7 1 23 345 367 345 367 0.98

6 13 2.9e-05 0.0024 18.5 2.2 1 23 374 396 374 396 0.98

7 13 4.9e-06 0.0004 20.9 0.6 1 23 402 424 402 424 0.96

8 13 1.3e-05 0.0011 19.5 0.2 1 23 430 452 430 452 0.98

9 13 6.9e-07 5.7e-05 23.6 1.2 1 23 458 481 458 481 0.96

10 13 3.6e-06 0.0003 21.3 0.5 1 23 487 510 487 510 0.96

11 13 5.5e-06 0.00046 20.7 2.8 1 23 516 538 516 538 0.99

12 13 8.9e-05 0.0074 16.9 0.4 1 23 544 566 544 566 0.94

13 13 0.00028 0.023 15.4 0.1 1 23 572 596 572 596 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.9	2.4e+02	2.7	0.3	2	17	67	82	66	83	0.84
2	13	0.00054	0.045	14.5	0.1	1	23	258	280	258	280	0.95
3	13	2.9e-05	0.0025	18.5	1.2	1	23	288	310	288	310	0.98
4	13	4.2e-06	0.00035	21.1	0.3	2	23	318	339	317	339	0.97
5	13	4.1e-06	0.00034	21.1	0.7	1	23	345	367	345	367	0.98
6	13	2.9e-05	0.0024	18.5	2.2	1	23	374	396	374	396	0.98
7	13	4.9e-06	0.0004	20.9	0.6	1	23	402	424	402	424	0.96
8	13	1.3e-05	0.0011	19.5	0.2	1	23	430	452	430	452	0.98
9	13	6.9e-07	5.7e-05	23.6	1.2	1	23	458	481	458	481	0.96
10	13	3.6e-06	0.0003	21.3	0.5	1	23	487	510	487	510	0.96
11	13	5.5e-06	0.00046	20.7	2.8	1	23	516	538	516	538	0.99
12	13	8.9e-05	0.0074	16.9	0.4	1	23	544	566	544	566	0.94
13	13	0.00028	0.023	15.4	0.1	1	23	572	596	572	596	0.94

Sequence Information

Coding Sequence: ATGATGGCCAATTCGGCGAAGAACTCTGCTCACTGCCTGATATGCAACGGCAAAGTCGGCGTATCGACTCGCAACAGTATacgaattttcaatgaaagtcTTCCTCAGTCAGTCGTTCAGCCCGAAAAACCGCTCATCGAGACGATATGCGGCATACTGGAAAAAGAACTCACAGAAGAATCAGTACATTCCGTCGTTGTgtgcaaaaaatgttataaactGTTCACCGAATTTGACGAACTCGAGAATAGAATGGCCGAGATAAAGCACGAAATCTACACGAATTACGAGAATACTCTTAAGAAGGTAACGCCGGCTATTCCGACGCAAGAGGAGTACAACGATCACGATTACATAGACAATTCCGATGGTCAAATAGTCGAGACTCTGGACTCGAAATATGACGAGAAGGAGAGCGAAGCTTCGTCCCCGATAAAAAATTCCGAGAGCAGCGAGCACATAGCCGAGTATTTGGTAGACGAAATAGACAAATCACACATCGAAGACGTGGAGTATATAGAGGAGCAAGAAGAAATGATAATTAAGGAAGATCCGTCGCCGACGGAAATCGACACAACGTCCGAGACGAAGAGGAGCCAAACGAAGAAAGGCAAAGCCGCCACGGTGAAGATCGAGGAAACACAGGAACAAACGGTCACGCGCGACGGTACGGATTATACGTGCCTTCTGTgcacgaacgacgacgatagaTTTGTCGGCGACGCGAAGGAAATTGTACTACACGTGAAGGGGGTTCACGAGTCGCGACTTTACATCTGTGATATTTGCGGATTGGACTTcaagaagagaaacgaattgTCGATTCATCTCGACGATCACGTTGCCAAGGAGGAGGGAGATTTTCAGTGCGAAGTATGCAACAGGATATTCAGTAATTTGCGACTATTTCGCATTCACAAGCGCATACATTATCCCCAAGTGAAATCTTGGCCGTGCTCCACTTGCGGCAAAAGATACAGttcgaaaaatttattggaAGAGCACATAAACACGCACACCGGTGTCAGACCATACGTGTGCGAAACGTGCGGCAAAGATTTCGCCTCGAAGTACACGTACAAGGCTCACGCCAAGACTCACGAGGTACGCCCACGACCGTTCGAGTGTACGCAGTGCAACAAGTCGTTCTTGAGCCAACAGAATCTCAATCAACACGAGAGAACTCACAATGGAGTGAAGGAATACGTGTGTCATCAGTGCGGCAAAGCTTTTGGCTCACCGCACAATCTCGAGGTTCACAATATCGTTCACACCGGTTACAAGCCTTACATATGCCGAATGTGCGGCAAAGCTTTCGCGCGAAAAGCGGAGATTCGAGATCACGAGCGCACGCACACCGGCGAAAAGCCTTACCAGTGTGAATTCTGCGGAGCTACTTTCAGTCAACGATCGAATCTTCAATCGCACAAACGCGCGACTCACTACAACGACAAGAGATACAAGTGCGACGATTGCGGCAAAGGATTCAAGAGACGAAGATTGCTCGATTATCACATAAAAGCCGCGCACACCGGCGAGAGACCGTACAAGTGCGAGACTTGCACGGCGACTTTCGTCTATCCGGAACACTTCAAGAAACACATGCGCATTCATACCGGAGAGAAACCGTACCTGTGCGAGGTATGCGGAAAAGCGTTCAACAGTCGCGACAACAGAAACGCTCATCGTTTCATTCACAGCGACAAAAAGCCTTACGAGTGCCTTGTCTGCGGAATGGGGTTCATGAGAAAGCCATTGTTATACGCGCACATGCAGACTCAGgGTCATTTGAATGACACGATAGTTGTTAATCAGCCGAGATTAACGACGGAGGAAGATCAGGTGATTTCGATTCCCGAGGGCGATGTAGAATTGCTGATGGACGAAACGGAAACCGAGCAGCTCGAAGAAACGGAGCTCTACGTTGCCGAGCTCAAAGATCATGTTATCATTCAGCAAGGCGATGAACACATTTATCAGGAGGAAAACGTCCTTAGCATACCAGCGGAGGAGGGCATGGAGCAGGAAGAAGATCAtcatctcgtcgtcgatgggCAGATGACCTTCACCGAGACGGAGGTATTGGAGTGCAAGACGGACGATTGCGAACAACAGGTTGAGGAAGTGTACAGTTACAACACGGGCGAGGACGGCGAAACGATAGTGGTTCCGGCGTCGGCCGATTACAAAGAGATAGTGGGCGATAGTAAAAACTCGGTGCGGCTCGTACAGATAAGAataccgtcgtcgtcggccgGCGAAGCACGAAGTTGGCTGAGTCTCGTGCAGAATACATAA
Protein Sequence: MMANSAKNSAHCLICNGKVGVSTRNSIRIFNESLPQSVVQPEKPLIETICGILEKELTEESVHSVVVCKKCYKLFTEFDELENRMAEIKHEIYTNYENTLKKVTPAIPTQEEYNDHDYIDNSDGQIVETLDSKYDEKESEASSPIKNSESSEHIAEYLVDEIDKSHIEDVEYIEEQEEMIIKEDPSPTEIDTTSETKRSQTKKGKAATVKIEETQEQTVTRDGTDYTCLLCTNDDDRFVGDAKEIVLHVKGVHESRLYICDICGLDFKKRNELSIHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCSTCGKRYSSKNLLEEHINTHTGVRPYVCETCGKDFASKYTYKAHAKTHEVRPRPFECTQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEDQVISIPEGDVELLMDETETEQLEETELYVAELKDHVIIQQGDEHIYQEENVLSIPAEEGMEQEEDHHLVVDGQMTFTETEVLECKTDDCEQQVEEVYSYNTGEDGETIVVPASADYKEIVGDSKNSVRLVQIRIPSSSAGEARSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00629279;
90% Identity: iTF_00397504;
80% Identity: -