Dlut015239.1
Basic Information
- Insect
- Dyspetes luteomarginatus
- Gene Symbol
- -
- Assembly
- GCA_963669185.1
- Location
- OY769911.1:10806281-10809376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 2.8e+02 2.4 0.2 3 17 65 79 63 80 0.81 2 13 0.00023 0.019 15.5 0.1 1 23 255 277 255 277 0.95 3 13 2.7e-05 0.0022 18.5 1.2 1 23 285 307 285 307 0.98 4 13 1.3e-05 0.0011 19.4 0.7 2 23 315 336 314 336 0.97 5 13 0.00052 0.042 14.4 2.2 1 23 342 364 342 364 0.97 6 13 2.8e-05 0.0023 18.4 2.0 1 23 371 393 371 393 0.98 7 13 2.1e-05 0.0017 18.8 1.3 1 23 399 421 399 421 0.96 8 13 8.2e-06 0.00067 20.1 0.3 1 23 427 449 427 449 0.98 9 13 6.2e-07 5.1e-05 23.6 1.2 1 23 455 478 455 478 0.96 10 13 4.3e-05 0.0035 17.8 1.1 1 23 484 507 484 507 0.96 11 13 5e-06 0.00041 20.7 2.8 1 23 513 535 513 535 0.99 12 13 8e-05 0.0066 16.9 0.4 1 23 541 563 541 563 0.94 13 13 0.00037 0.03 14.8 0.1 1 23 569 593 569 593 0.94
Sequence Information
- Coding Sequence
- ATGACGGCAGATTCTGCTAAAGATTCAACTCATTGCCTCATATGTAACAGCAAAGTAGGAGTATCGACTCGGAACAGTGTGcgaattttcaacgaaaattccATTACTGCCTCTGAAAAGCCTCTCATTCAAACAATTTGCTCTgtgctagaaaaaaatataactgaaACGAATGTACATTCAGTagtaatatgtaaaaaatgttacaaattATTCAGTGAGTTTGACGAGCTCGAGAATAGGCTTGCCGAAATTAGATTGGAAATTTACACGAATTACGAGAAaacgatgaagaaaataacACCCGAAATTCATATTCAGGACGAGTATAACGATCATGACTATATAGACAATTCAGATGGTCAGATTGTAGAATCTTTGGATCCAAAGTacgacgagaaagagagcgaacATTCTTcaccgataaaaaaatcagagagcACTGAAAATATAACCGAGCAATATTTAGTgcaagaaattgaaaaaaatccattggaAATTGCCGAGTACGTGGAAGACAATGACGAGGTAATACTGAAGCTCGAAGAAACGACAACAGAATCAGAAAAAACGAGCGAGTCGCAAACGAGCCAAACGAAGAAAGTCCAAAAGAGCATAAAGATCGAGGATACGCAGGAACAAATTGTCGAGAGAAATGGCTCGGAGTACACGTGCCTTTTGTGCCCAAGCGACGACGAGCGTATCGTCGGTAATGCAAAATTGATCGTTTCGCATGTTAAAGAAATACACGATTCGCGCTTGTACATTTGCGACATTTGCGGGgaggattttaaaaaaagaaacgaattgTCAATTCATCTGGATGATCATGTTGCCAAGGAGGAGGGAGACTTTCAGTGTGAAGTTTGCAATAGGATATTTAGCAATTTGCGACTATTTCGTATTCACAAGCGTATACATTATCCTCAAGCAAAATCGTGGTCTTGCGAGACTTGTGGCAAAAGATACAGTTCGAAAAATCTCCTTGAGGagcacacgaacacacacacgggAATGCGTCCTTACGTTTGTGAATGTTGTGGCAAAGATTTTGCATCGAAATACACTTACAAGGCTCACGCAAAGACTCACGAGGTACGACCACGTCCCTTTGAATGTAGCCAGTGCAACAAGTCATTTCTCAGTCAACAAAATCTCAATCAGCACGAGAGAACTCACAACGGTGTCAAGGAATACGTTTGCCATCAGTGCGGAAAAGCATTTGGTTCTTATCACAATCTCGAAGTTCACAATATCGTTCATACCGGCTACAAGCCTTACAGTTGCAGAATGTGCGGCAAAGCATTCGCTCGAAAAGCCGAGATAAGAGATCACGAGAGAACGCACACGGGAGAAAAGCCTTATCAGTGCGAATTTTGCGGTGCTACTTTCAGTCAAAGATCAAATTTGCAATCGCACAAACGAGCGACTCATTACAACGACAAGAGGTATAAATGCGACACGTGCAATAAAGGATTCAAGAGGCGAAGACTCCTCGATTATCACATAAAAGCCGCTCATACAGGCGAGAGACCCTACAAGTGTGAAACTTGTACAGCAACTTTTGTCTATCCGGAACATTTCAAGAAACACATGCGCATTCATACCGGCGAAAAGCCATATTTGTGCGAGGTATGTGGAAAAGCTTTCAACAGTCGTGACAACAGAAATGCTCATCGTTTCATTCACAGTGACAAAAAGCCATACGAGTGTCTCGTATGCGGCATGGGATTTATGAGAAAACCTCTTTTGTACTCTCACATGCAGACACAGgGCCACTTGAACGACACGATTGTCGTTAATCAGCCGAGATTAATGACCGAGGACGATCAGGTAATCAATATTCCAGGTGATGAAGTGGAATTATTGATGGAGGGTGCGGAGAATGAACAGCTCGAAGAAACCGAGCTTTATGTTGCTGAACTCAAAGATCATGTTATCATTCAACGTGGAGATGAGACCATTTACGAGGAGGAACATGCACTCAGTGGTCCAGAGGAGGAGAGTGGGGAACAAGAAGAAATTGATCATCAACTTGCCGTTGATGGACAGATGACTTTCGAGAATGCCGAATCGATGGAATGCAAGCCAGATCAGGAGGAAAGACAGGTCGAAGAGATTTATTACAGCACGAATGAGAATGGCGAAACGATAGTCGTGCCAGCAACGTCGGATTACAAAGATATTGTCGGggacgataaaaattctcttcgaCTTGTACAAATACGAATACCCTCGAGTTCGGGTGGCGAGGCGAGAAGTTGGCTCAGCCtagtaaaaaatacataa
- Protein Sequence
- MTADSAKDSTHCLICNSKVGVSTRNSVRIFNENSITASEKPLIQTICSVLEKNITETNVHSVVICKKCYKLFSEFDELENRLAEIRLEIYTNYEKTMKKITPEIHIQDEYNDHDYIDNSDGQIVESLDPKYDEKESEHSSPIKKSESTENITEQYLVQEIEKNPLEIAEYVEDNDEVILKLEETTTESEKTSESQTSQTKKVQKSIKIEDTQEQIVERNGSEYTCLLCPSDDERIVGNAKLIVSHVKEIHDSRLYICDICGEDFKKRNELSIHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQAKSWSCETCGKRYSSKNLLEEHTNTHTGMRPYVCECCGKDFASKYTYKAHAKTHEVRPRPFECSQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSYHNLEVHNIVHTGYKPYSCRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDTCNKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYSHMQTQGHLNDTIVVNQPRLMTEDDQVINIPGDEVELLMEGAENEQLEETELYVAELKDHVIIQRGDETIYEEEHALSGPEEESGEQEEIDHQLAVDGQMTFENAESMECKPDQEERQVEEIYYSTNENGETIVVPATSDYKDIVGDDKNSLRLVQIRIPSSSGGEARSWLSLVKNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841285; iTF_01057077; iTF_01056248; iTF_01057821;
- 90% Identity
- -
- 80% Identity
- -