Basic Information

Insect: Cryptus armator
Gene Symbol: Snai1
Assembly: GCA_963971235.1
Location: OZ020238.1:16137390-16140729[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.5 5.2e+02 2.5 0.3 2 17 67 82 66 83 0.83

2 13 0.00034 0.051 15.1 0.1 1 23 257 279 257 279 0.95

3 13 2.9e-05 0.0043 18.5 1.2 1 23 287 309 287 309 0.98

4 13 4.2e-06 0.00063 21.1 0.3 2 23 317 338 316 338 0.97

5 13 4.1e-06 0.0006 21.1 0.7 1 23 344 366 344 366 0.98

6 13 2.9e-05 0.0042 18.5 2.2 1 23 373 395 373 395 0.98

7 13 4.8e-06 0.00072 20.9 0.6 1 23 401 423 401 423 0.96

8 13 1.3e-05 0.002 19.5 0.2 1 23 429 451 429 451 0.98

9 13 6.9e-07 0.0001 23.6 1.2 1 23 457 480 457 480 0.96

10 13 3.6e-06 0.00053 21.3 0.5 1 23 486 509 486 509 0.96

11 13 5.5e-06 0.00082 20.7 2.8 1 23 515 537 515 537 0.99

12 13 8.9e-05 0.013 16.9 0.4 1 23 543 565 543 565 0.94

13 13 0.00028 0.041 15.4 0.1 1 23 571 595 571 595 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.5	5.2e+02	2.5	0.3	2	17	67	82	66	83	0.83
2	13	0.00034	0.051	15.1	0.1	1	23	257	279	257	279	0.95
3	13	2.9e-05	0.0043	18.5	1.2	1	23	287	309	287	309	0.98
4	13	4.2e-06	0.00063	21.1	0.3	2	23	317	338	316	338	0.97
5	13	4.1e-06	0.0006	21.1	0.7	1	23	344	366	344	366	0.98
6	13	2.9e-05	0.0042	18.5	2.2	1	23	373	395	373	395	0.98
7	13	4.8e-06	0.00072	20.9	0.6	1	23	401	423	401	423	0.96
8	13	1.3e-05	0.002	19.5	0.2	1	23	429	451	429	451	0.98
9	13	6.9e-07	0.0001	23.6	1.2	1	23	457	480	457	480	0.96
10	13	3.6e-06	0.00053	21.3	0.5	1	23	486	509	486	509	0.96
11	13	5.5e-06	0.00082	20.7	2.8	1	23	515	537	515	537	0.99
12	13	8.9e-05	0.013	16.9	0.4	1	23	543	565	543	565	0.94
13	13	0.00028	0.041	15.4	0.1	1	23	571	595	571	595	0.94

Sequence Information

Coding Sequence: ATGATGGCGAATACCGCAAAGAACTCGGCGCACTGCCTGATATGCAATGGCAAAGTCGGAGTATCGACTCGTAACAGTATAcgaatttttaacgaaaatctttCTCAGTCCGTTGTTCATCCTGAAAAACCTCTCATCAAGACAATATGCGGTATATTGGAGAAAGAACTCACAGAAGAATCAGTACATTCCGTCGTTATGtgtaaaaaatgttacaaactATTCACAGAGtttgACGAACTCGAGAACAGAATGGCCGAGATAAAGCATGAAATCTACACGAATTACGAGAACACTCTTAAGAAAGTAATTCCCGAGATTCCGATACAAGAGGAGTACAACGATCACGATTACATAGACAATTCCGATGGTCAAATAGTCGAAGCTCTGGAGTCGAAATACgaggagaaagagagcgaaGCTTCGTCGCCGGTTAAAAATGCCGAGGGCAGTGAGCACATAGTTGAGTATTTGGTAGATGAAATGGACAAATCTCACATCGAAGACGTTGAGTACATAGAGGAAGCGGAAGAGACGATAGTTAAGGAAGATTTGTCGCAAACGGAAACCGATAAAACTTCCGAGACGAAGAAAAGTCAGTCGAAGAGAGGGAAAGCTAGCGTAAAGATCGAGGAAACGCAAGAACAATCGGTAGCGCGCGATGGTACTGATTACACGTGCCTATTGTGCACTAACGACGACGATAGATTTGTCGGGGACGCTAAGGAAATTGTGCTGCATGTCAAAGGGGTTCACGAGTCACGATTATACATCTGTGATATTTGCGGAATGGATtttaagaaaagaaacgaattatCGGTTCATCTCGACGATCACGTTGCCAAGGAGGAGGGAGATTTTCAGTGCGAAGTATGCAACAGGATATTCAGTAATTTGCGTCTATTTCGTATTCACAAGCGGATACATTATCCCCAAGTGAAATCGTGGCCGTGTTCTACTTGCGGAAAAAGATACAGCTCCAAAAATCTATTAGAAGAACATATAAACACGCACACCGGTATGAGACCTTACGTGTGCGAAACGTGCGGCAAAGATTTTGCTTCGAAGTACACTTACAAGGCTCATGCAAAGACTCACGAGGTTCGTCCGCGACCGTTCGAATGTACTCAGTGCAACAAGTCGTTTCTGAGTCAACAGAATCTCAATCAACACGAGAGAACTCACAACGGTGTCAAGGAATACGTGTGTCATCAGTGCGGTAAAGCTTTCGGTTCGCCACACAATCTTGAGGTTCACAACATCGTTCACACCGGTTATAAACCGTATATATGCCGAATGTGCGGCAAAGCTTTCGCACGAAAAGCGGAGATACGAGATCACGAGCGCACGCACACGGGTGAAAAGCCCTATCAGTGTGAATTTTGTGGTGCTACTTTTAGTCAACGATCAAATCTTCAATCGCACAAACGCGCGACTCACTACAACGACAAGCGATACAAATGTGACGATTGCGGGAAAGGATTCAAGAGACGAAGATTGCTGGATTATCACATAAAAGCCGCACATACCGGCGAGAGACCGTACAAGTGCGAGACTTGTACAGCAACTTTCGTCTATCCGGAACACTTCAAGAAACACATGCGTATTCACACCGGAGAAAAACCGTACTTATGCGAGGTATGCGGTAAAGCATTCAACAGCCGTGACAACAGAAACGCTCATCGGTTCATTCACAGCGACAAAAAGCCTTACGAATGTCTTGTCTGCGGAATGGGCTTCATGAGAAAACCGTTGTTATACGCGCACATGCAGACTCAGggCCACTTAAACGACACGATAGTTGTTAATCAGCCGAGATTAACAACGGAAGAAGATCAAGTGATTTCGATTCCCGAGGGCGACGTAGAGTTGCTGATGGACGAAACGGAAACGGAGCAGCTGGAAGAAACGGAACTATACGTTGCCGAGCTGAAAGATCACGTTATCATTCAGCAAGGAGATGAACATATTTATCAGGAGGAAAACGTCCTTAGTATACCAGCGGACGAGGGTATGGAGCAGGAAGAAGATCATCATCTCGTCGTTGATGGACAGATGACCTTCACTGAGACCGAGGTATTGGAATGTAAGACAGACGATTGCGAACAACAGGTTGAAGAAGTTTATAGTTACAATACAGGCGAAGACGGCGAAACGATAGTAGTTCCAGCGTCGGCCGATTACAAAGAAATAGTAGGCGATAGCAAAAACTCCGTACGGCTCGTACAGATAAGAATACCGTCATCTTCGGCCGGTGAGGCCAGAAGTTGGCTGAGTCTCGTACAGAATACATAA
Protein Sequence: MMANTAKNSAHCLICNGKVGVSTRNSIRIFNENLSQSVVHPEKPLIKTICGILEKELTEESVHSVVMCKKCYKLFTEFDELENRMAEIKHEIYTNYENTLKKVIPEIPIQEEYNDHDYIDNSDGQIVEALESKYEEKESEASSPVKNAEGSEHIVEYLVDEMDKSHIEDVEYIEEAEETIVKEDLSQTETDKTSETKKSQSKRGKASVKIEETQEQSVARDGTDYTCLLCTNDDDRFVGDAKEIVLHVKGVHESRLYICDICGMDFKKRNELSVHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCSTCGKRYSSKNLLEEHINTHTGMRPYVCETCGKDFASKYTYKAHAKTHEVRPRPFECTQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEDQVISIPEGDVELLMDETETEQLEETELYVAELKDHVIIQQGDEHIYQEENVLSIPADEGMEQEEDHHLVVDGQMTFTETEVLECKTDDCEQQVEEVYSYNTGEDGETIVVPASADYKEIVGDSKNSVRLVQIRIPSSSAGEARSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00414498;
90% Identity: iTF_00398277; iTF_00841285;
80% Identity: -