Iinq008782.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ischnus inquisitorius
Gene Symbol
-
Assembly
GCA_963924025.1
Location
OZ001248.1:7140916-7143531[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8.7e-06 0.00073 20.1 4.0 1 23 347 369 347 369 0.99
2 15 0.014 1.1 10.1 4.1 1 23 375 398 375 398 0.97
3 15 9.9e-06 0.00082 19.9 1.8 2 23 498 519 497 519 0.97
4 15 1.7e-06 0.00014 22.3 1.9 1 23 525 547 525 547 0.98
5 15 0.00037 0.031 15.0 0.8 1 23 553 575 553 575 0.98
6 15 4.1e-06 0.00034 21.1 1.3 1 23 590 612 590 612 0.98
7 15 7.6e-06 0.00063 20.3 1.2 3 23 620 640 618 640 0.98
8 15 2.7e-05 0.0023 18.6 1.5 1 23 646 668 646 668 0.97
9 15 0.00093 0.078 13.7 0.2 1 23 674 696 674 696 0.99
10 15 7.1e-06 0.00059 20.4 0.3 1 23 702 725 702 725 0.94
11 15 2.1e-05 0.0018 18.9 1.3 1 23 731 753 731 753 0.98
12 15 0.00046 0.038 14.7 4.7 1 23 759 781 759 781 0.98
13 15 6.9e-06 0.00058 20.4 0.2 1 23 787 810 787 810 0.96
14 15 5.6e-06 0.00046 20.7 0.9 1 23 816 838 816 838 0.97
15 15 4.1e-06 0.00034 21.2 4.5 1 23 844 866 844 866 0.99

Sequence Information

Coding Sequence
ATGGATACAACGCTGAGCAACGAATGGATGCCTTCGAAGGTTTCCCTGACCTGTGATTTGCCAGCTGCGCTCAATGCTCCATTCGCTTCAATCAAGCAAGAAAATTATCTAAACGGAGAGACGCACAATCAACAAAAGATAATAGAAGACAGGATTTCTGAGACAATCGATTTTGTCGATGTCAAGCCCGAGACAATATCCAGTAGCCCGTGCTGTCGCGTTTCTCCGATAGGAATAAATCACAGAGCTCAGATAGACGTGATAGACATGCGAGACGAGTGTTCGAAAATGTACAATTATCTCCTGATCTACGAAGAGCAATATTCCAAATTCGTTGTTTTGAGAGCCCTGCGTAGCGCGGATCCCGGCGAAGTAGCCGTTCAGCTCGTCGACATCGTAACGACGATCGGCGCGCCGCGGATAATTCAGAGCGGAAACGGCCGCGATTACGCGGAGCAAGTGGTGCGAGAGATTCGTCTGATGCTCAGGGATTTTTGCGTCGTGCACGGCGACGCGGCGCGGAACGTCGagaaatctcgagatttcAAGAATCTGATAAAGTCGTGGACGAACAAGAATTCGGAGAAATCGTGGCACGAGGCATTGGCGATCGTTCAAGTGGCGGAGAACACGGCGtcgaattcgcgaaacgcCACGGCGCCGAGTCAATTGTTCTTCGGTCGAAGCATTTGCGACGATTTGCGACGAACGATCGGCGGAAAGAGCTCGCACGGGAGTGTCGGCGCGACAGACGAGGACGCGAGCCCGATCGTCGCGAAGGAGCGCGATTCTTTCGCGATCACAACGAAAGATTCTCTCTCGGTTTCGATCGGCCGAGCGGTggaaatcgcgagagagaccgaaACTCTTCCTCGAGACGAGAACGCGGACGATGGCGATGAGAAAGCAACGATAGCCAAGGAAAACGTGAATAGCTTCAATTTCGCGAGCATAAAGAACGAATCGCCGATCGTCAGACTCGACAACGCGAGTCTTCATTCGGACGAGGAGGAACGCGTGAATTCCGACAAATACAACTATCGTTGCAAAATCTGCCAGAAGCAGTACGTGAAACTCGGACATCTGAGAAATCACATGAAAACCCACTCGAGAGTCGGAAATTACGAGTGCACGATTTGTTGCAAAACTTTTCGACTCTCGAGTCTCTACGACAAGCACATGGAAAGATTTCACGAGACTGGCGAAAGCGCGAGTCTCGAAAATTGCGGTCGTTTGAAAGAAATTGTCGAAGACGTGGTTGACGACAAAACCGAGAATCTCCAGGAGGACAAGGAAATCGATACGAAAATAACGCGTCGGAATgagaaaacgacgaaagtCAAAACACCACCGAAGGAGCTAAAAGAATCGCCTATGTCTCTATCATTGTCGAGGGTTTCGGCGAAAAAGCATTCGAACAGAAGTTCGATCTCCGTTTTCAAGAGAAAGCTGAATAATTCAACCGCAAAGCTCAACGGCAATCCCTTGCTCGAATGTACCTATTGCAagcaaaaattcaattttccaagCGTGCTGAAGCGCCACATGCGTTCGcacacgaacgagagaccgTACGTTTGCAAGGTGTGCGGCAAGAGTTTCAAGCAGCTCGGTCATCTGAGCCAACACTCGTTGACCCACACCGACTATCGTTCCTTCCAGTGTACGATATGCTCGATAAAGttcgattctctcgattcGCTGAAGCTTCATTCGCAGTCCCACAAGGACGAGGCGGTCTACCGACCCAAAGAGATTTATCGTCTCTTCGAGTGCGACAGTTGCAAAAAAGTATTCACGACGAAGAGCGTTCTCGAGCGTCACATATTCACGCATTCGCACGAGCGGCAATTCGGCTGCAAGGTTTGCGGCAAGAGATTCAAGCAAGCCGGTCACGTCAAGTCGCACATGCTCGTTCACACGGGCGAGCGCAAATTCGCGTGTACCGTTTGCTCGAAGAGATTCAGCCTCTCGAATTCCCTGAAGAAACACATGTACGTTCACAACGGCGAGAAGCCCTATCAGTGCGACGTTTGCGGCGCGAGGTTTCTCGAAAAGCGCAATCTCAACGGTCATCTGATGACTcacacgaacgagagaccgTTTTCGTGCAAAATATGCGGCAAGCGTTACACCCTCGCGGACACGCTTCGTCGTCACATAAGCGCCGCTCACGAGGACGGTCGTACTTATCAGTGCGAGATATGCGCGAAAATGTTCAAGCAATTGGCGCATCTGTCTGTGCACAAGAAAGTTCACAACGACGAGAGACCTTTTCAGTGTCATCTgtgcgagaaaaatttcaagCACAAGAACGTGCTGAAATCTCATCTGGCCATTCACGCGAACGTTCGGCCCTTCGAGTGCGACGTGTGCAAAGCGACCTTCGTGCGCAAAACCAACCTTCAGACTCACATTGCCTCGGCGCACATGAACGAACGCCCTTACGTCTGCACGATTTGCAACAAAAGATTCAAGCAGATAAGTCACCTGAACGGTCACATCGTTGTTCACAGCAACTCGATGCCTTATCAGTGCGATTTTTGCGACAGACGGTGCAACAGACTCGATAATCTCAAGAAACACATGAGACTGCacacgaaaaacaaagaataa
Protein Sequence
MDTTLSNEWMPSKVSLTCDLPAALNAPFASIKQENYLNGETHNQQKIIEDRISETIDFVDVKPETISSSPCCRVSPIGINHRAQIDVIDMRDECSKMYNYLLIYEEQYSKFVVLRALRSADPGEVAVQLVDIVTTIGAPRIIQSGNGRDYAEQVVREIRLMLRDFCVVHGDAARNVEKSRDFKNLIKSWTNKNSEKSWHEALAIVQVAENTASNSRNATAPSQLFFGRSICDDLRRTIGGKSSHGSVGATDEDASPIVAKERDSFAITTKDSLSVSIGRAVEIARETETLPRDENADDGDEKATIAKENVNSFNFASIKNESPIVRLDNASLHSDEEERVNSDKYNYRCKICQKQYVKLGHLRNHMKTHSRVGNYECTICCKTFRLSSLYDKHMERFHETGESASLENCGRLKEIVEDVVDDKTENLQEDKEIDTKITRRNEKTTKVKTPPKELKESPMSLSLSRVSAKKHSNRSSISVFKRKLNNSTAKLNGNPLLECTYCKQKFNFPSVLKRHMRSHTNERPYVCKVCGKSFKQLGHLSQHSLTHTDYRSFQCTICSIKFDSLDSLKLHSQSHKDEAVYRPKEIYRLFECDSCKKVFTTKSVLERHIFTHSHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFACTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00397500; iTF_00398272;
90% Identity
-
80% Identity
-