Cvid006409.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptus viduatorius
Gene Symbol
-
Assembly
GCA_964006125.1
Location
OZ023222.1:6047408-6050020[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.3e-05 0.0011 19.6 4.2 1 23 346 368 346 368 0.99
2 15 0.013 1.2 10.1 4.1 1 23 374 397 374 397 0.97
3 15 9.8e-06 0.00087 19.9 1.8 2 23 497 518 496 518 0.97
4 15 1.7e-06 0.00015 22.3 1.9 1 23 524 546 524 546 0.98
5 15 0.00036 0.032 15.0 0.8 1 23 552 574 552 574 0.98
6 15 4.1e-06 0.00036 21.1 1.3 1 23 589 611 589 611 0.98
7 15 7.5e-06 0.00067 20.3 1.2 3 23 619 639 617 639 0.98
8 15 2.7e-05 0.0024 18.6 1.5 1 23 645 667 645 667 0.97
9 15 0.00092 0.082 13.7 0.2 1 23 673 695 673 695 0.99
10 15 7e-06 0.00063 20.4 0.3 1 23 701 724 701 724 0.94
11 15 2.1e-05 0.0019 18.9 1.3 1 23 730 752 730 752 0.98
12 15 0.00046 0.041 14.7 4.7 1 23 758 780 758 780 0.98
13 15 6.8e-06 0.00061 20.4 0.2 1 23 786 809 786 809 0.96
14 15 5.5e-06 0.00049 20.7 0.9 1 23 815 837 815 837 0.97
15 15 4e-06 0.00036 21.2 4.5 1 23 843 865 843 865 0.99

Sequence Information

Coding Sequence
ATGGATACAACATTGAGCAACGAATGGATGCCTTCAAAAATTTCCCATACTTGCGATTTGCCTGCGACGTTCAACGCTCCGTTTGCTTCCGTCAAACAAGAAAATTATCTCAATGGAGAGACAAACAATCAACAAACAATCATAGAGGACAGAATTTCTGGGACAATTATTTCCGTTAACGAAAAAACTGAAACAATGTCCAATCCTCGTTGTCGCGTTTCGCCGATAAGAATTAATCATAGAGCTCAGATAGATGTGATAGACATGCGAGACGAGGATTCAAAAATTTACAATCACCTCTTGATCTATGAAGAGcaatattcaaaattcgttGTTTTGAGAGCCTTGCGTAGCGCGGATCCCGGCGAAGTTGCCGTTCAGCTTGTCGAAATCGTAACGACGATCGGAGCTCCGCGAATAATTCAGAGCGGAAACGGACGCGATTACGCGGAACAAGTAGTTCGAGAGATTCGTCTATTGCTCCGAGATTTTTGCGTCGTGCACGGCGATGCAGCGAAAAACGTCGAGAAACCTCGAGATTTCAAGAATTTGATAAAATCGTGGATGAGcaaaaattcgggaaaattgTGGCACGATGCATTGGCGATTCTTCAAGTCGCGGAGAACACGGCGTCGAATTCGCGAAACAACACGGCGCCGAGTCAGTTGTTTTTCGGTCGAAATATTTGCGACGATTTGCGGCGAACCATCGGCGGAAAAAGTTTACTCGGGAGCGTCGGAGCGACGGACGAGGACGCGATCACGATTGCCTCAAAGGAGCGCAATTCTTTCGCGAATTCGATGAAAGATCCTTTTCCAGTTTCGATCAGTAAAGCGGTGGAAAATgcgagagaaacagaaaaactttctcgagaCGATAACGCCGAGAATTTCGATGAGAAATCAACGATAGCCAAGGAAAACGTAAATAGCTTTAATTtcgtaaatgtaaaaaacgaaTCGCCGATCAGCAAAGCCGATACCGCGAGTCTTCATTCGGACGAAGAAGAACGCGTTAATTCCGACAAATACAACTTTCGTTGCAAAATCTGCCAGAAGCAGTACGTGAAACTCGGACATCTGAGAAATCACATGAAAACTCACGCGAGAGTCGGAAACTACGAGTGCACTATTTGTTGCAAAACTTTCAGACTCTCGAGTCTCTACGACAAGCATATGGAAAGATTTCACGAGGAGACCGACAACCCGACTCTTGAAACTTGCGATCGATTGAAAGAAATCGACAAAGACGAGattggcgaaaaaatcgagaaattcaagGAAAATGAGGAAATCTCTatgaaaaaaacgcgacgGGATGAGAAGTCCGAAGAAATCAATACCGCGTCGGAGAAGCGAAAGAAATCGCCTTCGTCTCTATCATCCCCGCGAGTGTCGGCAAAAAAGCATTCGAAGCGAATTTCGAGTtccatcttaaaaaaaaagctgaataATTCAGTGGCAAAGCTGAACGGCAATCCATTGCTTGAATGTACTTATTGTAagcaaaaattcaattttcccaGTGTGCTGAAGAGGCACATGCGTTCGCACACGAACGAGAGACCTTACGTTTGCAAGGTGTGCGGCAAGAGTTTCAAGCAACTCGGTCATCTGAGTCAACACTCGTTAACGCACACGGATTATCGTTCCTTTCAGTGTACGATATgttcaataaaatttgattcTCTAGATTCGCTAAAGCTTCATTCGCAATCTCACAAAGACGAAGCGGTCTACAGACCCAAAGAGATTTATCGTCTTTTCGAATGCGATAGTTGCAAAAAAGTATTCACGACGAAGAGCGTTCTCGAGCGCCACATATTTACGCATTCGCATGAGCGTCAATTCGGCTGCAAGGTGTGCGGAAAACGGTTCAAACAGGCCGGTCACGTTAAATCTCATATGCTTGTGCACACGGGGGAACGTAAATTCGCGTGTACCGTTTGCTCGAAGCGATTCAGTCTCTCGAATTCCTTGAAAAAACATATGTACGTTCACAACGGCGAAAAACCCTATCAGTGCGATGTTTGCGGGGCGAGATTTCTCGAAAAGCGTAATCTCAATGGTCATTTAATGACGCACACGAACGAGAGACCGTTTTCTTGTAAAATATGCGGTAAGCGTTACACTCTCGCCGATACGCTTCGTCGTCACATAAGTGCGGCTCACGAAGACGGGCGTACGTATCAGTGCGAAATTTGCGCAAAAATGTTCAAACAATTGGCGCACCTATCGGTGCACAAGAAAGTTCACAACGACGAGAGACCTTTTCAGTGTCATCTGtgcgaaaagaattttaaacaCAAAAACGTACTGAAATCTCATTTAGCAATTCACGCAAATGTTAGGCCCTTCGAGTGCGACGTTTGCAAAGCAACTTTTGTGCGGAAAACCAATCTTCAGACTCACATTGCCTCGGCGCACATGAACGAACGTCCGTACGTTTGTACGATTTGCAACAAAAGATTCAAACAGATAAGTCATTTAAACGGTCACATTGTTGTTCACAGCAACTCGATGCCTTATCAGTGCGACTTTTGCGATCGACGGTGCAACAGACTCGATAATCTCAAGAAACACATGAGACTGCATACGAAgaacaaagaataa
Protein Sequence
MDTTLSNEWMPSKISHTCDLPATFNAPFASVKQENYLNGETNNQQTIIEDRISGTIISVNEKTETMSNPRCRVSPIRINHRAQIDVIDMRDEDSKIYNHLLIYEEQYSKFVVLRALRSADPGEVAVQLVEIVTTIGAPRIIQSGNGRDYAEQVVREIRLLLRDFCVVHGDAAKNVEKPRDFKNLIKSWMSKNSGKLWHDALAILQVAENTASNSRNNTAPSQLFFGRNICDDLRRTIGGKSLLGSVGATDEDAITIASKERNSFANSMKDPFPVSISKAVENARETEKLSRDDNAENFDEKSTIAKENVNSFNFVNVKNESPISKADTASLHSDEEERVNSDKYNFRCKICQKQYVKLGHLRNHMKTHARVGNYECTICCKTFRLSSLYDKHMERFHEETDNPTLETCDRLKEIDKDEIGEKIEKFKENEEISMKKTRRDEKSEEINTASEKRKKSPSSLSSPRVSAKKHSKRISSSILKKKLNNSVAKLNGNPLLECTYCKQKFNFPSVLKRHMRSHTNERPYVCKVCGKSFKQLGHLSQHSLTHTDYRSFQCTICSIKFDSLDSLKLHSQSHKDEAVYRPKEIYRLFECDSCKKVFTTKSVLERHIFTHSHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFACTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00841279;
90% Identity
iTF_00397500;
80% Identity
-