Ilum015453.1
Basic Information
- Insect
- Ignelater luminosus
- Gene Symbol
- Rfx2
- Assembly
- GCA_011009095.1
- Location
- Ilumi1.2:44267-82697[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-37 3.8e-33 114.5 0.1 5 78 1 74 1 75 0.98 2 2 1.7 2.3e+04 -3.3 0.0 42 55 417 432 407 441 0.69
Sequence Information
- Coding Sequence
- GTCCAGTGGCTTTTAGAAAATTACGAAACAGCAGAAGGTGTATCATTGCCACGCTCCACATTGTATGCACACTATTTACGCCATTGTGCAGATAATAAATTAGAACCAGTTAATGCAGCTTCGTTTGGAAAATTAATACGGTCAGTGTTTCTCGGATTAAGAACTAGGAGGCTAGGAACAAGGGGAAATTCAAAATATCATTATTATGGTATTAGAGTCAAACCGGGTTCTTCATTGACAGTAGTAGAAGAAAGTGCATCTAGAAGTTTATCAGGAAGTAGTAGTATGTCAACAAAAGTGGCCGGAAATGGAAATCGTAGTTTTAAGCGCAGTTCTGATTCAGCAGATGCTTCTGTATCTGTTAGTGTTATTACACAACATTTATCATACCTTGGTGATGGTAGCAATGCCATGCCTCACTTTCCTGAAATTCAATTTATGGGAGGTGTTCTTCCTGAAGAATGTAGTCCTGAAGATGTTGATACATTTAAATCTATTTATCGTGAACATCTAGAAGCATTTTTAGATGCCATAATGAGTTTAGAATTTGCAACAGTAGAATCATTATGGAGAGAGTTTTGGCGATCTCAAGATAACAATAATGGAGATGAATGTGAGGAAGAAAAATATTTATCAAAATCAAAATTATTTGCTTTATGCAATCTCGAACCTATTCAAGCATTTGTTCGTCAAGTTGATCTCTCATTTTATCAAAATTTAATTCAAGTACTTGTGCCTGATGTACTAAAACCAATTCCTGCCACTCTTACACAGTCTATAAGAAATTTTGCTAAAAGTCTTGAAAGTTGGTTAACAGCAGCGATGACTGGTGCTCCATCAGCAATGTTAAGTGCCAAGTTATCTGCCGTAGCTGCTTTTGGTTCTAGTCTTCGTCGTTATACTTCGTTAAACCACTTGGCACAAGCAGCAAGAGCTGTTTTACATAATGGCACACAAATAGCTCAAATGTTGGCCGATTTAAACAGAGTTGATTTTCATAGTGTACGTGAACAAGCCTCGTGGGTTTGTCAGTGTGATCATGAGGTGGTTGCACGGTTTGAGTCTGATTTTAAGCTTACACTGCAGCAACAAAATTCTTTGGAACAATGGGCGTCATGGTTAAAAAATGTTGTGAAAACAGCTTTAAAACCATTTGAGGGAAAACCTAATTTTTCTAAAGCTGCTAGACAATTTTTGTTAAAGTGGAGTTTTTATAGTTCGATGGTAATTCGTGATCTGACTCTGCGTTCTGCAGCTAGTTTTGGTTCATTTCACCTTATAAGATTGTTATATGATGAATATATGTTTTACTTAATTGAACATCAAGTTGCTGAAGTTACTGGTGTTGTTCCAATTGCTGTAATGATAGAAGGCATTAAACAAGATTCATTACACAATAATGTAAGTATTTATGGAAATGACATGGGAGTATGTAATGGAAACTCGAGTTTACCGAATAGTTCGAAATTGGGTTGCATTAGTCCTACAGACCATACATCTAAACGAATGAAAATCAGCTAG
- Protein Sequence
- VQWLLENYETAEGVSLPRSTLYAHYLRHCADNKLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPGSSLTVVEESASRSLSGSSSMSTKVAGNGNRSFKRSSDSADASVSVSVITQHLSYLGDGSNAMPHFPEIQFMGGVLPEECSPEDVDTFKSIYREHLEAFLDAIMSLEFATVESLWREFWRSQDNNNGDECEEEKYLSKSKLFALCNLEPIQAFVRQVDLSFYQNLIQVLVPDVLKPIPATLTQSIRNFAKSLESWLTAAMTGAPSAMLSAKLSAVAAFGSSLRRYTSLNHLAQAARAVLHNGTQIAQMLADLNRVDFHSVREQASWVCQCDHEVVARFESDFKLTLQQQNSLEQWASWLKNVVKTALKPFEGKPNFSKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEVTGVVPIAVMIEGIKQDSLHNNVSIYGNDMGVCNGNSSLPNSSKLGCISPTDHTSKRMKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01400099; iTF_00001720; iTF_00151998; iTF_01252473; iTF_01123420; iTF_00429629;
- 90% Identity
- iTF_00151998;
- 80% Identity
- -