Alei080248.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- Rfx2
- Assembly
- GCA_035610365.1
- Location
- CM069436.1:34077749-34081637[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-38 1.8e-33 117.6 0.1 3 78 6 81 4 82 0.97 2 2 1.8 1.1e+05 -3.4 0.0 42 55 422 437 415 447 0.67
Sequence Information
- Coding Sequence
- ATGACTGCGTCTTCTATCACCGTTCAATGGCTTTTGGAAAACTACGAAACTGCTGAAGGTGTTTCATTACCTCGTTCTACTCTATACGCTCACTATCTGCGCCATTGTGCTGATAATAAATTAGAACCAGTGAATGCCGCGTCGTTTGGAAAATTAATTAGATCAGTATTTCTCGGATTAAGAACAAGAAGGCTGGGCACTAGgggaaattctaaatatcattattacGGAATTCGAGTTAAACCGGGATCGTCCTTAACTGTTGTCGAAGAAAGTTCTTCTCGGAATTTAACTTCTAGCAGTATGTCTACAAAAGTGTCTGGGAATGGAAATCGAAGCTTTAAGAGAAGTTCTGATTCCACTGATACATCGGTATCTGTGAGCGTTATAACACAACACTTGACTTATCTTGGAGATGGTAGCAACGCATTACCAAATTTTCCGGATATTCACTTTATTGATGGTCTGCCAGAAGAATGTAGCATTGACGATGTTGATACGTTCAAaTCAATATATCGTGAACATCTCGAAGCATTCTTGGATGCCATATTAAGTTTGGAATTTGCTACAGTAGAGTCTCTCTGGAGAGAGTTTTGGAGATCGCAAGATAATAACAACGGAGACGAGTGTGaggaagaaaaatatttatcaaaatcGAAATTATTTGCGCTTTGCAATATAGAAGCCGTTCAGGTGTTTGTCCGTCAAGTTGATCTCTCTTTTTATCAGAATTTAATACAAGTACTGGTTCCTGACGTCTTAAAACCTATACCCGCAACTCTGACGCAATCTATAAGgaattttgcaaaaagtttaGAAAGCTGGTTAACAGCTGCTATGAATGGCGCGCCCACTGCAATGCTCAATTCTAAGTTATCAGCTGTAGCCGCATTTGGTTCTAGCCTTCGTCGTTATACGTCTTTAAACCATTTAGCGCAAGCAGCAAGAGCTGTTTTACACAACGGCACACAAATAGCTCAAATGCTAGCCGATCTAAATAGAGTCGATTTTCATAGTGTTCGAGAGCAAGCATCTTGGGTTTGCCAGTGCGATCATGACATTGTTGCTAGATTTGAAGCTGATTTTAAACTAActttacaacaacaaaattcgTTAGAACAATGGGCTTCTTGGTTGAAGAATGTGGTGAGGAGTGCCCTAAAGCCGTATGAAGGAAAAccaaatttttctagagctgctaggcaatttttacttaaatggAGTTTTTACAGTTCTATGGTAATCAGAGACTTAACTCTTCGTTCAGCCGCAAGTTTTGGATCATTCCATTTGATTCGACTCCTTTATGAtgaatatatgttttatttaatcgaACATCAAGTTGCCGAAGTCACAGGTGTTGTTCCTATTGCAGTTATGATAGAAGGAATTGTAAAACGTAAATATTCAACGGTAAAGTTGAACAATGAGTATCATTCCGTATGGAAGTTTAAAATGGAGATGATTCTCATAAAGGAAGGCTTGTGGAAAATAATCACAGGTTCAGCTCCAACAAACAGTACGGAGTTAGCGACATGGAATTAA
- Protein Sequence
- MTASSITVQWLLENYETAEGVSLPRSTLYAHYLRHCADNKLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPGSSLTVVEESSSRNLTSSSMSTKVSGNGNRSFKRSSDSTDTSVSVSVITQHLTYLGDGSNALPNFPDIHFIDGLPEECSIDDVDTFKSIYREHLEAFLDAILSLEFATVESLWREFWRSQDNNNGDECEEEKYLSKSKLFALCNIEAVQVFVRQVDLSFYQNLIQVLVPDVLKPIPATLTQSIRNFAKSLESWLTAAMNGAPTAMLNSKLSAVAAFGSSLRRYTSLNHLAQAARAVLHNGTQIAQMLADLNRVDFHSVREQASWVCQCDHDIVARFEADFKLTLQQQNSLEQWASWLKNVVRSALKPYEGKPNFSRAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEVTGVVPIAVMIEGIVKRKYSTVKLNNEYHSVWKFKMEMILIKEGLWKIITGSAPTNSTELATWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00838156;
- 90% Identity
- iTF_00838156; iTF_00001720;
- 80% Identity
- -