Istr022738.1
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- -
- Assembly
- GCA_951213275.1
- Location
- OX577871.1:8136020-8141231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00013 0.011 16.8 3.8 1 23 157 180 157 180 0.95 2 17 0.0069 0.56 11.4 5.1 1 23 189 212 189 212 0.97 3 17 0.023 1.9 9.8 0.4 2 23 225 247 225 247 0.97 4 17 0.0049 0.4 11.9 2.1 1 23 256 279 256 279 0.96 5 17 0.00012 0.0094 17.0 2.5 1 23 291 314 291 314 0.96 6 17 0.0006 0.049 14.7 0.5 2 23 338 360 337 360 0.96 7 17 0.00016 0.013 16.5 1.8 2 23 370 392 369 392 0.96 8 17 0.44 36 5.7 3.3 2 20 397 415 397 417 0.92 9 17 0.0012 0.097 13.8 1.5 2 21 422 441 421 444 0.94 10 17 0.00017 0.014 16.5 2.8 3 23 454 475 453 475 0.96 11 17 0.0003 0.024 15.7 4.5 1 23 480 503 480 503 0.96 12 17 0.00017 0.014 16.4 0.3 1 23 515 538 515 538 0.95 13 17 0.0079 0.64 11.2 0.5 1 20 557 576 557 580 0.91 14 17 2.4 1.9e+02 3.4 2.9 12 23 596 607 586 607 0.76 15 17 0.0081 0.66 11.2 2.0 2 23 613 634 612 634 0.97 16 17 0.015 1.2 10.3 0.2 1 23 699 721 699 721 0.97 17 17 0.079 6.5 8.1 1.9 1 23 727 750 727 750 0.97
Sequence Information
- Coding Sequence
- ATGTCACTGCCGATAAAACCAGCCAAGGTAAAAGAGGAGCGGCGAGACCCAACATTTTTCCTTCCCGAAGAAGAAATGTCGTATGAAATCAAGAAAAAGaggaagaaaaaaaagaagaaacagGAAGACCCGTTCAAGgATATTGAGGAGAAAATCCGTGAACCTGCATTGACAGCGCTAGACCCAGATATTGGAGCAGCTTTGGACCCAGAAGTAACtattaaagttgaaaatattgAAGTAGAGTTGGACATTAATGATttCTCGCATATAGATGAGGACTTCCAAGACAGCAACGAGAACAGCCAACCGGAACCCATCGTCAAATTCGAAGAACAAAACAAAGAAGCTGTTCTACTTACATTTGAAAGTGTTATCAATGACAAAATCCTATACGGAGAACCTATAGAGTCTATAGACCATGATTTTGACAATGAACAAGTCGAACCAGCAGAACTAGCAATGTCCTTCCTTTGCAAGATATGTCATTTGGTGTTTAAAACCCAGAAAACTCTGGTCCAACATCAGAAACGGACGCATAAACGATTTAGACGAACTTTCAAACACAAATGTGAACATTGTGGCATGCaatatgaatttaaaaacaGCTTAGAAGCTCATAAGAAGAGAAGGCACTCACCGAACTCTGTCATTGATGATATGATGGAGCGAACTTGTGACATTTGTGCGCTAGTCTTCAAAGGGATAAATAGACTACGTATGCATATGCGAAGAACCCACGGTTCCTTCGAAGATGCCTTCAAACATGTCTGCCAAGACTGCGGTCTGACGTATGATAAAACTCAAAGTCTACTCGTTCATCGAAAAAGAAAACACCCAACGGTAAAGAAACCAAAAGTAACCCAATGGTTCAACTGTCTGTTCTGTCCTAAAGTCTTCACTCGAAGAGAAACCTACACGAGACATGTACAAAGAAAGCATAAAGTCGATGATGATAACGTCAGTACaaaaggtaaaattaaatcAGAAAAGAGTGAAATCGGAGAAACAACTTGTATGTACTGCAGTCTAGTTTTCTCATCTATCGGTTATTTAAATTGGCATTTAAGAAGGAAGCATAATGTTAAAATCGAtgattacaaattaaaatgtaaaatttgtaACTTATCCTATAATAAAGTTGAAAGTTTAAAACGGCATATTAAGAGGAAACACACGCAGGATAATTACTGTAGTGTGTGTTGTAAACAATTTACAAGTAAAAGTAGTTATATTAACCACACACATATAAAACAGGTTCAGGAGTGCAATCTTTGCGGGCAGATATTCGCACACCAAGGTGGGTTAGCCAAACACCTACGTTGCACCCACAAAATTGAAACCCCAGCGACAGTTTTCTGTCACATGTGTAACAAAGGTTTCTACagcaaaaaatacttaaaatctcATATTATACGGGCACATTTGAAAGTCACTTACCATTGTAAGTTTTGTGATAAAAACTTTAAAGCGAAAGAAAGTTATCGTAGACACATGATAGTTAAACACCCGAATGATAACGACTTAGAAGTAGGGCCCAGGCATATGTGTGAGAAATGTCCTGAAGGTTTTAGAAACGAGTTTGAATTAGCCAAACATATAAATCTAATTCACAATGAACCTGAATTCGAAATTAAGAAAGAAGAAGACGACTCGATCAAGACTTCTTTCAAATGTACCAAATGTACTGATGAATTTATCACATGGGAGCAATTGAGGGCACATTTCGGTGAATCTCACCACTTGACCGAGGAAGTACAGTGTCAAATCTGCGGAGATTTAATGTCCAGATCGGATCTACAGAAACATATAAAAGTCCACGACGAAATCGAAGTCCAATGCAAATACTGCgagtttaaaactaaaaacaaagtTAGTATGACCCAACATCTACTACGGCACAAGAATTCTGAAACTTTAAACTGTGATTATCCATTATGTCGGTACAAAACCTTCTACGAAGATGCAATGTTGAAACACAAGAAACGACATGAAGTTAGTGCTAAATTGCAGTGTGCTAGTTGTCCGTTCCAGactatgaataaatatatacttcgaTACCACGAAGAGGCCCATGCAACGGGTAAAAAGAGATATTCATGTGACCAATGTGACTATGCAACAATTCTGCCTGCCAATTTAGTTCAGCACAAGTACAAACATTCCACAGAGAAAAGGTTTAAATGTGAAGTTTGTCCTTTTGCCACTAAATATAATACGTCTCTAAGGTTTCACGTCAGAAAGAAACACTGTGATCTGCCTACTTTTAGGTAg
- Protein Sequence
- MSLPIKPAKVKEERRDPTFFLPEEEMSYEIKKKRKKKKKKQEDPFKDIEEKIREPALTALDPDIGAALDPEVTIKVENIEVELDINDFSHIDEDFQDSNENSQPEPIVKFEEQNKEAVLLTFESVINDKILYGEPIESIDHDFDNEQVEPAELAMSFLCKICHLVFKTQKTLVQHQKRTHKRFRRTFKHKCEHCGMQYEFKNSLEAHKKRRHSPNSVIDDMMERTCDICALVFKGINRLRMHMRRTHGSFEDAFKHVCQDCGLTYDKTQSLLVHRKRKHPTVKKPKVTQWFNCLFCPKVFTRRETYTRHVQRKHKVDDDNVSTKGKIKSEKSEIGETTCMYCSLVFSSIGYLNWHLRRKHNVKIDDYKLKCKICNLSYNKVESLKRHIKRKHTQDNYCSVCCKQFTSKSSYINHTHIKQVQECNLCGQIFAHQGGLAKHLRCTHKIETPATVFCHMCNKGFYSKKYLKSHIIRAHLKVTYHCKFCDKNFKAKESYRRHMIVKHPNDNDLEVGPRHMCEKCPEGFRNEFELAKHINLIHNEPEFEIKKEEDDSIKTSFKCTKCTDEFITWEQLRAHFGESHHLTEEVQCQICGDLMSRSDLQKHIKVHDEIEVQCKYCEFKTKNKVSMTQHLLRHKNSETLNCDYPLCRYKTFYEDAMLKHKKRHEVSAKLQCASCPFQTMNKYILRYHEEAHATGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00836815;
- 90% Identity
- iTF_00835852;
- 80% Identity
- -