Idim012742.1
Basic Information
- Insect
- Idaea dimidiata
- Gene Symbol
- -
- Assembly
- GCA_949358125.1
- Location
- OX442333.1:1479741-1481750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6e-05 0.0048 18.0 3.6 1 23 70 93 70 93 0.95 2 17 0.0064 0.52 11.6 5.1 1 23 102 125 102 125 0.97 3 17 0.021 1.7 10.0 0.4 2 23 138 160 138 160 0.97 4 17 0.0045 0.37 12.1 2.1 1 23 169 192 169 192 0.96 5 17 0.00013 0.01 17.0 2.7 1 23 204 227 204 227 0.96 6 17 0.00087 0.07 14.3 1.4 2 23 249 271 248 271 0.97 7 17 0.00015 0.012 16.7 1.8 2 23 281 303 280 303 0.96 8 17 4.8 3.9e+02 2.6 3.1 3 20 309 326 308 328 0.92 9 17 0.0011 0.09 14.0 1.5 2 21 333 352 332 355 0.94 10 17 3.7e-05 0.003 18.6 3.0 3 23 365 386 364 386 0.97 11 17 0.00013 0.01 16.9 3.6 1 23 391 414 391 414 0.96 12 17 8.6e-05 0.0069 17.5 0.3 1 23 426 449 426 449 0.96 13 17 0.00028 0.022 15.9 0.8 1 20 469 488 469 492 0.92 14 17 2.8 2.3e+02 3.3 3.2 12 23 508 519 498 519 0.76 15 17 0.0075 0.61 11.4 2.0 2 23 525 546 524 546 0.97 16 17 0.014 1.1 10.5 0.2 1 23 611 633 611 633 0.97 17 17 0.074 6 8.3 1.9 1 23 639 662 639 662 0.97
Sequence Information
- Coding Sequence
- ATGGACGACGGTTACCCCGACAACAACGAAAATAGCCAACCAGAACCTTTCGTCAAATTTGAACAGCAGAACAAGGAGGCTGTGCTGCTTACATTCGAGAGTGTTATTAGTGACAAGATCCTCTACGGTGAACCTATAGACTCTATAGAGTTCGGCCATGGTAATGACGATGACCAAATTGACGAGCCTCCAGAACTAGCGATGTCATTCTTGTGCAAAATCTGCCACTTGGTCTTCAAAACCCAAAAAACCCTAATCCAACATCAAAAAAGAATGCACAAAAAGTTCAGGCGCTCCTTCAAACACAAATGCGAGCATTGTGGAATGCAATACGAATTCAAAAACAGCTTAGAAGCTCATAAAAAGAGAAGGCATTCTCCAGATGCTGTCATAGACGACATGAAAGAGAGAACTTGTGAAATATGTGCACTAGTCTTCAAAGGGATTAATAGACTACGGATGCATATGCGAAGAACTCATGGATCCTTCGAAGATGCATTCAAACATGTCTGCCAAGATTGCGGGCTGACGTATGACAAGACACAAAGTCTATTAGTCCATCGTAAAAGAAAACATGATAATGTGAAAAAACCGAAAGTAAACCAATGGTTTAATTGTATGTTCTGCCCGAAAGTGTTCACCCGTAGAGAAACATATACAAGGCATGTACAAAGAAAGCACAAAGTCGATGATGATCTTGGAAAGGGTATAATTAAATCTGAGAAGAGTGATGTCGGAGAAACGACTTGCAAGTTCTGTAGTTTAGTTTTCTCTTCTGTAAATTACTTGAACTGGCATTTGAGAAGGAAGCATAACGTTAAAATAGAGGATTACAAGTTGAAATGTAAGATTTGTAACCTATCGTATAATAAGGTTGAAAGTTTAAAACGGCATATAAAGAGAAAACACACACATGAGAACTATTGCAGCGTTTGTTGCAAGCAATTTACTAGTAAAATTACATATATGAATCATACTCATGTGAAGCAAGTGCAAGAATGCAATCTTTGCGGGCAAATATTTGCGCACCAAGGCGGTTTAGCCAAGCATCTACGATGCACACACAAAATCGAAAGTCCGGCCACAGTATTCTGTCATATTTGTAACAaaggtttttatagtaaaaagtaCTTAAAATCTCATATGATACGGGTGCACTTTAAAGTCACATACCACTGTAAATTGTGCGATAAAAACTTTAAAGCGAAAGAGAGTTACCGTAGGCATATGATAGTTAAACACCCTAATGACAACGATCTCGAAGTGGGACCTAAACATATGTGTGAGAAATGTCCTGAAGGATTTAGAAATGAGTTTGAATTAGCGAAACATATTAATATAGTGCACAACGAACCCGAATTTcttgaaataaagaaagaagaagacgaTTTAATCAAAACTTCTTTCAAGTGTACAAAATGTACTGAGGAATTTGCTACATGGGAGCAATTACGGACTCATTTCGGCGATTCTCATCACCTAACAGAGGAAGTGCAATGCCAAATCTGCGGTGATTTAATGTCTAGATCAGATTTACAGAAACACATTAAAATCCACGACGAAATTGAAGTTCAATGCAAATACTGCGAATTTAAGACGAAGAACAAAGTGAGTATGACACAACATTTGCTTCGACACAAGAATTCTGAAACCCTAAACTGTGATTACCCACTTTGCCGTTACAAGACTTTCTACGAAGACGCAATGTcgaaacataagaaaaaacatgAAGCAAGTGCAAAATTACAATGTGCGAGTTGTCCTTTTCAAACTATGAATAAGTATATACTTAGATACCACGAAGAGGCCCATGTTACGGGTAAAAAGCGGTATTCCTGTGACCAGTGTGACTATGCCACAATACTGCCCGCTAACCTAGTTCAGCATAAGTATAAACATTCCAACGAGAAGCGGTTTAAGTGTGAAGTCTGTCCGTTTGCCACTAAATACAATACGTCTTTAAGGTTCCATGTTAGGAAGAAACATTGTGATTTACCTACTTTCAGCTAG
- Protein Sequence
- MDDGYPDNNENSQPEPFVKFEQQNKEAVLLTFESVISDKILYGEPIDSIEFGHGNDDDQIDEPPELAMSFLCKICHLVFKTQKTLIQHQKRMHKKFRRSFKHKCEHCGMQYEFKNSLEAHKKRRHSPDAVIDDMKERTCEICALVFKGINRLRMHMRRTHGSFEDAFKHVCQDCGLTYDKTQSLLVHRKRKHDNVKKPKVNQWFNCMFCPKVFTRRETYTRHVQRKHKVDDDLGKGIIKSEKSDVGETTCKFCSLVFSSVNYLNWHLRRKHNVKIEDYKLKCKICNLSYNKVESLKRHIKRKHTHENYCSVCCKQFTSKITYMNHTHVKQVQECNLCGQIFAHQGGLAKHLRCTHKIESPATVFCHICNKGFYSKKYLKSHMIRVHFKVTYHCKLCDKNFKAKESYRRHMIVKHPNDNDLEVGPKHMCEKCPEGFRNEFELAKHINIVHNEPEFLEIKKEEDDLIKTSFKCTKCTEEFATWEQLRTHFGDSHHLTEEVQCQICGDLMSRSDLQKHIKIHDEIEVQCKYCEFKTKNKVSMTQHLLRHKNSETLNCDYPLCRYKTFYEDAMSKHKKKHEASAKLQCASCPFQTMNKYILRYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSNEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00835852; iTF_00837816;
- 90% Identity
- iTF_00835852;
- 80% Identity
- -