Istr004653.1
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951213275.1
- Location
- OX577849.1:1374988-1391921[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 3.3e+03 -2.3 2.8 37 73 33 68 24 101 0.42 2 3 2.7e-77 7.6e-73 246.1 26.8 1 297 119 395 119 398 0.88 3 3 0.12 3.4e+03 -2.4 10.6 124 166 417 463 403 472 0.61
Sequence Information
- Coding Sequence
- ATGGGTCGTTTATCGGGAGCAGCGACTCCTGACAATAGCGACGAGGAGACCGGAGAGGCCTTCACCGATGGAGACTTCGAAGACAGCGACGATAACACTGTCGTTGAAAATAACGATAAAACTAACAACAATATAAACGAAACTGTTAACCAAGAAGTACAAAAGAAACTGACCAATGGCAACTCTTCGAAGTCTTCATCATCCCCGAAAGAGTCCAAAATAAATGGACGTAAGAACAGTGAGCCTCATTCGAGTGATGCTGAAAGTCACAGTGGATTAGTTGATGGAAGAAGAGATTCTCATGGTGATCAAAGTCCTTCTATTGTCGGCATTCTTGGAAACCAACATAATCATgcTGAACAGCGCTTGGCGGCGAGACGCGCGGCGCGGGCCGAGGCGCGTGAGATCCGCATGCGGGAACTGGAGCGACAGCAGAGGGAGCAGGAGGATCATGCTGATAAGGCGTATGACATGTATGCCGAGACAGTAGGCCGCCGCGGGCCGCGGTTGGCGGCGCTCAGCCCGGCCGCGATCCACTCGCCGCGACGCAGTTCCGAGGACTCCGCAGATGATACGTTCAGTGTTAAAGACTTAAGGCACGAGCTCAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATATTAAACGCGCAGCTGGATAACGACAAGGCTGCGCTCGGGTACCAGCTCGAACTGCTCAAGGACAGGATCGAGGAGCTGCATGAGGAGCATGCCCAGTTACAGCGGGAGCACCGCGAGAAATGTTCAGCGCATGAGCGTCTAAAGCGGGAGTATGTGGCCCTCGAGCGCGAGGTGAATAGCGCTCGGTCGGCCATCGTAGCGCGGGACCAGGCCGCCAACGACGCGGGGTATACGTTCGTAGAGGCGGGCGAGGGGGGGCAGGGGGACCGCGTGCCTGCACTCGCGCTCGTCTCGCACGACGCGCAGAAATTACTCGACGATGCGGGGGAAGGCACGCTCGACGTGCGGTTGCAGAAGCTGGCTAGTTCGAAGTTGTCACTGGAGTCTGAAGTTCGCAAGCTTAAGTTGCAGTTGAACGAGGAGCGAGCAGCGAGGCAGAACGGTGTCGCTAACCATCACGATGAGGACTATGAGAATGAATTGGAGACCTTGCGACGTGGTATAACGGAGGCGAAGGCGCGAGctgcgcgcgccgaggcggaGGCGGCGCTGCAGGCCGCCGCGGCCGCGAGGCTAGACGCGCAGCTCACGAGGCTGCGGGCGCGCCAGGACCAGCACGACGACATGGAGGAGCAACTCAAGCAGGAGCGACGCAAGCTGCAGAGAGAGGCACGAGAAGCCCTCAATCGAGTGGAGGAACTGGAGACGGAGAACAGTCACCTGACAAAGCGACTCGACAAGCTGAAGAATGCCAAGTCCGCTCTACTGAAGGACCTGTGA
- Protein Sequence
- MGRLSGAATPDNSDEETGEAFTDGDFEDSDDNTVVENNDKTNNNINETVNQEVQKKLTNGNSSKSSSSPKESKINGRKNSEPHSSDAESHSGLVDGRRDSHGDQSPSIVGILGNQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAIHSPRRSSEDSADDTFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHAQLQREHREKCSAHERLKREYVALEREVNSARSAIVARDQAANDAGYTFVEAGEGGQGDRVPALALVSHDAQKLLDDAGEGTLDVRLQKLASSKLSLESEVRKLKLQLNEERAARQNGVANHHDEDYENELETLRRGITEAKARAARAEAEAALQAAAAARLDAQLTRLRARQDQHDDMEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00834650;
- 90% Identity
- iTF_00834650;
- 80% Identity
- -