Basic Information

Insect: Hypsopygia costalis
Gene Symbol: -
Assembly: GCA_937001695.2
Location: CAKZJU020000085.1:102033-103847[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.023 2.4 10.0 1.1 1 23 25 47 25 47 0.96

2 16 0.037 3.7 9.4 0.0 2 23 76 98 75 98 0.93

3 16 0.0038 0.39 12.5 0.2 2 23 119 141 118 141 0.94

4 16 0.00052 0.053 15.2 2.1 2 23 147 169 146 169 0.95

5 16 0.002 0.2 13.4 1.1 1 23 174 197 174 197 0.96

6 16 0.7 71 5.4 0.1 2 23 200 222 199 222 0.93

7 16 0.0092 0.94 11.3 1.7 2 22 229 249 228 249 0.94

8 16 0.0038 0.39 12.5 0.6 1 23 309 332 309 332 0.93

9 16 0.067 6.9 8.6 0.1 3 23 361 382 359 382 0.95

10 16 0.033 3.4 9.5 0.2 3 23 406 428 404 428 0.94

11 16 0.00047 0.048 15.3 0.6 3 20 435 452 433 456 0.90

12 16 0.0074 0.76 11.6 0.4 1 23 461 484 461 484 0.97

13 16 0.00041 0.042 15.5 0.5 2 23 490 512 490 512 0.94

14 16 3.5e-05 0.0035 18.9 4.7 1 23 516 539 516 539 0.97

15 16 0.00015 0.015 16.9 0.6 2 23 546 567 545 567 0.96

16 16 0.0042 0.43 12.4 2.3 1 23 573 595 573 595 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.023	2.4	10.0	1.1	1	23	25	47	25	47	0.96
2	16	0.037	3.7	9.4	0.0	2	23	76	98	75	98	0.93
3	16	0.0038	0.39	12.5	0.2	2	23	119	141	118	141	0.94
4	16	0.00052	0.053	15.2	2.1	2	23	147	169	146	169	0.95
5	16	0.002	0.2	13.4	1.1	1	23	174	197	174	197	0.96
6	16	0.7	71	5.4	0.1	2	23	200	222	199	222	0.93
7	16	0.0092	0.94	11.3	1.7	2	22	229	249	228	249	0.94
8	16	0.0038	0.39	12.5	0.6	1	23	309	332	309	332	0.93
9	16	0.067	6.9	8.6	0.1	3	23	361	382	359	382	0.95
10	16	0.033	3.4	9.5	0.2	3	23	406	428	404	428	0.94
11	16	0.00047	0.048	15.3	0.6	3	20	435	452	433	456	0.90
12	16	0.0074	0.76	11.6	0.4	1	23	461	484	461	484	0.97
13	16	0.00041	0.042	15.5	0.5	2	23	490	512	490	512	0.94
14	16	3.5e-05	0.0035	18.9	4.7	1	23	516	539	516	539	0.97
15	16	0.00015	0.015	16.9	0.6	2	23	546	567	545	567	0.96
16	16	0.0042	0.43	12.4	2.3	1	23	573	595	573	595	0.97

Sequence Information

Coding Sequence: ATGCGCAGAAGGAAAAATCTACAAATTCTGTTCAACAACACTACGATACTGCCATTTAAATGGCGCGGGAAGTATCTCTGTTTTTATTGCAGCAAAGATATAGCTGAATACTCAGAATTAAGGAAACACACGAAATCTCACGGGAACTGCTCCACAAGAGACCATTCCTTAAAAGTGCTTAAAGGAGGTCAAAACATGGAAATAAAAATCGATGTTTCAGATATTACTTGCGAGATTTGTAACGAACCGTTCCCGTCTTTTGATGAAATACTAAGTCATCTATACGTTAAACATAAATTGGAATACGATAAAGGCGTAGAAATGGCTATTGAGGAATACAGACTTACAGATCTAACATGTTTAGTTTGCGGAGAAAAGTTCTCGTATTTTGGATATCTTGTTTCCCATGTTAATAATACTCATCCTAAAAACTGTCTAATATGTGATAAATGCAATCAAAAGTTCAATAAGAAAAGAGATTTGTTTTCTCACATTAAAAACTATCATAGAGAAGGCGGTTATAGTTGTGAAATGTGCCCTCAAAGCTTTAGTTCCCTAAACATTTTACGAAAACATAGGAATAATAGACATCTCACTCGATGTAACATCTGCCAATTGAAGCTACCGTCCGCTGTTTTGAAGCAAAAACATATAGAATTAGAACATCCCGATGACGGCTCTTTACAATGTGACAATTGTTTCAAAGAGTTTCATACAAAACAAGGTCTCAAAATGCATGTTAGAAAATGTAAAGGTGAAGATGAACTGTTTGAAATTGCAATTAAGAAAGAAGGATACGATACAATGGACCTTGATGATAGTTACGAGGAGGTGAAAAGACCAAGCGTAAAGCAAATACGTGAAAATATCGTCATAGTTATCAATATGTCGACGGCTATACCTTTTAATTtctataaaaacaaattcaatTGTTTCTATTGCTCCAAAGACTTTCCTGATTCAGACACGATGAGAGAACATACAGTTATGGAGCATCCAATTTGTGatgtaaaagaaaaatgtataagAAAGTGCAGGGAATCCGTAGCGTGTGTTAAAATTGACGTATCTTCACTAGCTTGCAAAATTTGTTTCGAATCAATGAGTGATTTGGAAAATTTGCTCGATCATTTGATAATGAAACATGAAGCCAATTATGACAAATCGATAACAACGTGTCTTCAGCCGTACAGATTAATTAAAGATCACATGGCCTGTCCGAATTGTCCCGGAGAAGTGTTTAGATTCTTTGGGACACTTTTGAAACATATGAACAAGAAACAtactaacaataatattatttgtgtgTACTGCGGTCAAACGTTTCGCCGGGATCAAAATCTAAGAGTCCATATTTGGAGACATCACAGGGACGGgagatttaaatgtaatatttgtgGTGCCGAGTGTAATATACCGTCTAGATTGTATATGCATATGGCAAAAGCGCATGGTGTTAAAGCAGCGAAATGTCCGAAATGTCCAGAGACTTTTGCGACTCAGTATTTAAGACAAAAGCATTTGATTGAAACGCATGATTCCGGCCATAAATGTTCCTACTGCGGTAAGCTTTTCACTAGAAACTCGTTCATGCGCGATCATATCAGACGGACACATCTCAAAGAGAAGAACGTTGAATGCTCCATTTGTAACATGAAGTTCTTCAACAATATTCTTCTCAGGCGTCACATGGTGAAACATAGCGGAGAGAAGAATTTCCACTGCGATGTGTGCGGAGAAAGATTCTTCTGGAGAAAGAGTCTCAGAACACATATGGCTAGACATAATAAACATCTTCATTCCATACAACTGTAG
Protein Sequence: MRRRKNLQILFNNTTILPFKWRGKYLCFYCSKDIAEYSELRKHTKSHGNCSTRDHSLKVLKGGQNMEIKIDVSDITCEICNEPFPSFDEILSHLYVKHKLEYDKGVEMAIEEYRLTDLTCLVCGEKFSYFGYLVSHVNNTHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYSCEMCPQSFSSLNILRKHRNNRHLTRCNICQLKLPSAVLKQKHIELEHPDDGSLQCDNCFKEFHTKQGLKMHVRKCKGEDELFEIAIKKEGYDTMDLDDSYEEVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDTMREHTVMEHPICDVKEKCIRKCRESVACVKIDVSSLACKICFESMSDLENLLDHLIMKHEANYDKSITTCLQPYRLIKDHMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPETFATQYLRQKHLIETHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHLHSIQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198043;
90% Identity: iTF_00648422; iTF_01252048; iTF_01416105; iTF_00073074; iTF_00640714; iTF_00736819;
80% Identity: -