Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990881.1:3936178-3944847[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.026 2.2 9.8 1.1 1 23 117 139 117 139 0.96

2 16 2.8 2.4e+02 3.4 0.5 2 14 168 180 167 190 0.77

3 16 0.011 0.95 10.9 0.1 2 23 211 233 210 233 0.94

4 16 0.00032 0.027 15.8 2.6 2 23 239 261 238 261 0.95

5 16 0.021 1.8 10.1 0.7 1 23 266 289 266 289 0.95

6 16 0.48 41 5.8 0.1 2 23 292 314 291 314 0.93

7 16 0.0069 0.58 11.6 1.3 2 22 321 341 320 341 0.93

8 16 0.0054 0.45 11.9 0.5 1 23 398 421 398 421 0.93

9 16 0.13 11 7.6 0.3 3 23 450 471 448 471 0.94

10 16 0.1 8.8 7.9 0.2 3 23 495 517 493 517 0.94

11 16 0.00052 0.044 15.1 0.6 3 20 524 541 522 545 0.90

12 16 0.04 3.3 9.2 0.6 1 23 550 573 550 573 0.97

13 16 0.00084 0.071 14.5 0.4 2 23 579 601 579 601 0.94

14 16 3.7e-05 0.0031 18.8 4.9 1 23 605 628 605 628 0.98

15 16 0.00017 0.014 16.7 0.6 2 23 635 656 634 656 0.96

16 16 0.016 1.4 10.4 2.1 1 23 662 684 662 684 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.026	2.2	9.8	1.1	1	23	117	139	117	139	0.96
2	16	2.8	2.4e+02	3.4	0.5	2	14	168	180	167	190	0.77
3	16	0.011	0.95	10.9	0.1	2	23	211	233	210	233	0.94
4	16	0.00032	0.027	15.8	2.6	2	23	239	261	238	261	0.95
5	16	0.021	1.8	10.1	0.7	1	23	266	289	266	289	0.95
6	16	0.48	41	5.8	0.1	2	23	292	314	291	314	0.93
7	16	0.0069	0.58	11.6	1.3	2	22	321	341	320	341	0.93
8	16	0.0054	0.45	11.9	0.5	1	23	398	421	398	421	0.93
9	16	0.13	11	7.6	0.3	3	23	450	471	448	471	0.94
10	16	0.1	8.8	7.9	0.2	3	23	495	517	493	517	0.94
11	16	0.00052	0.044	15.1	0.6	3	20	524	541	522	545	0.90
12	16	0.04	3.3	9.2	0.6	1	23	550	573	550	573	0.97
13	16	0.00084	0.071	14.5	0.4	2	23	579	601	579	601	0.94
14	16	3.7e-05	0.0031	18.8	4.9	1	23	605	628	605	628	0.98
15	16	0.00017	0.014	16.7	0.6	2	23	635	656	634	656	0.96
16	16	0.016	1.4	10.4	2.1	1	23	662	684	662	684	0.97

Sequence Information

Coding Sequence: ATGATCGTAACAAACTGTACATTTTTGTATGATGTAATATTTGCGTGCCTGTATACTTGTATAGATGACTATCACAAGACAGAAGATGAACCAACAGTATCGGAAGACATAACAGTGTCAACGTTACCCGTGAAGAATAAACGTGGTAGACCCAAAAAGACATCAACGGTGGTGAAAACGGAGAAAAAGAAGGCAAAGCTCGAAGTGAAAGCTAAAACATCAAAAGCTGTTATTAAAGATTTTAAACAACGGAAATACAAGAGCGAATCGTCGTCGATGCGTAGAAGGCGAAATCTGCAAATACTATTCAACAACACAACGATATTGCCTTTCAAATGGCGTGGGAAGTATCTATGTTTCTATTGTAGCAAAGATATAGCAGAATATTCTGAATTGAGAAAGCATACAAAATCACATGGCAATTGTTCCACTAGAGATCATTCATTGAAAGTATTAAAAGGTGGACAGAACATGGAAATCAAAATAGATGTATCGGATATAAGCTGTGAGATTTGCAATGAACCATTCCCGTCTTTCAATGAAGTATTATGTCATCTATACATTAAACATAAACTAGAATACGATAAAGGTGTAGATATGGCCATAGAGGAATACAGACTAGTAGATCTAACATGTCTGGTTTGCGGTGAGAAATTTGCATATTTCGGTTATCTAGTGTCACATGTGAATAATATGCACCCGAAGAACTGTCTTATATGTGATAAATGCAATCAGAAATTCAACAAGAAGAGAGACTTGTTTTCACACATGAAGAACTATCACAGGGAGGGTGGTTACAGCTGTGAATTGTGCCCACAGATATTCAGTTCCTTAAATATATTAAGAAAGCATAAAAATAATAGACATCTAACTAGATGTAATATATGCCAATTGAAGCTACCGTCAGCGGCGTTGAAGCAGAAACATATAGAGTTGGAACACCCGGATGATGGCTCACTGCAATGTGATAATTGTTCCAAAGAGTTTCATACAAAACAAGGTCTAAAAATGCATGCGAGGAAATGTAAAAACGAGGAATTTGAACTTATAATCAAAAAGGATTTCGATGCAATGGATGTAGATGATGACTATGAAGAAGTGAAAAGACCTAGCGTTAAACAAATCAGGGAGAATATTGTTATAGTTATAAACATGTCCACGGCTATACCGTTTAATTTTTATAAGAATAAATTCAATTGCTTCTATTGCTCAAAAGATTTTCCGGATTCGGACATGATGAGGGAACATACTGTTATGGAACATCCAATATGTGATATAAAGGAGAAATGTATTAGGAAATGTAGAGAATCGGTCGCTTGCGTTAAAATTGATGTCTCCACATTAGCTTGCAAGATTTGCTTCGAGTCTATGAGTGATTTAGAACATCTACTCGATCATCTAATTATAAAACATGATGCTAACTATGATAAATCTATAACAACATGCCTCCAGCCTTACAGACTTATAAAGGACCATATGGCCTGTCCGAATTGTCCCGGCGAAATATTCAGATTCTTTGGCACATTATTGAAACATATGAATAAGAAACACACAAATAATAACATAATATGTGTGTACTGCGGTCAGACTTTTCGTCGTGATCAAAATTTGAGAGTTCATATATGGCGGCATCATAGAGATGGTAGATTTAGGTGTAATATCTGTAATGCTGAGTGTAATATACCGTCTAGATTGTACATGCATATGGCGAAAGCTCACGGTGTCAAAGCGGCTAAGTGCACAAAATGCCCAGAATCTTTTGCTACTCAATATCTAAGGCAGAAACATTTGATTGAAGCGCACGACTCTGGGCATAAGTGTACGTATTGTGGGAAACTTTTCACTAGGAATTCTTTCATGCGTGATCATATAAGACGTACACATCTTAAGGAGAAAAATGTCGAGTGTTCTATTTGTAATATGAAGTTCTTTAATAACATTCTTCTTAGGCGACACATGGTTAAACATAGCGGGGAGAAGAATTTTCATTGTGATGTCTGTGGTGAAAGGTTTTTCTGGAGAAAGAGTTTGAGGACTCATTTGGCTAGACATAACAAACATATACATTCCATACAGCTTTAG
Protein Sequence: MIVTNCTFLYDVIFACLYTCIDDYHKTEDEPTVSEDITVSTLPVKNKRGRPKKTSTVVKTEKKKAKLEVKAKTSKAVIKDFKQRKYKSESSSMRRRRNLQILFNNTTILPFKWRGKYLCFYCSKDIAEYSELRKHTKSHGNCSTRDHSLKVLKGGQNMEIKIDVSDISCEICNEPFPSFNEVLCHLYIKHKLEYDKGVDMAIEEYRLVDLTCLVCGEKFAYFGYLVSHVNNMHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYSCELCPQIFSSLNILRKHKNNRHLTRCNICQLKLPSAALKQKHIELEHPDDGSLQCDNCSKEFHTKQGLKMHARKCKNEEFELIIKKDFDAMDVDDDYEEVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDMMREHTVMEHPICDIKEKCIRKCRESVACVKIDVSTLACKICFESMSDLEHLLDHLIIKHDANYDKSITTCLQPYRLIKDHMACPNCPGEIFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFRCNICNAECNIPSRLYMHMAKAHGVKAAKCTKCPESFATQYLRQKHLIEAHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHLARHNKHIHSIQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013343;
90% Identity: iTF_00833335;
80% Identity: -