Hcos008774.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000149.1:1722921-1748136[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-80 1.4e-75 255.7 16.7 1 297 134 425 134 428 0.89 2 2 0.15 6.7e+03 -2.7 10.6 118 170 438 490 432 495 0.88
Sequence Information
- Coding Sequence
- ATGGGCTATCTATCCAAGCTGGTAACGAGTGACAATAGCGACGAGGAAAGCGGGGATGCCTTTACTGACGGCGATTTTGAAGATAGCGATGAAGAAACCGTAATCGTTCGCAATGGAGACGCCAATTCCAGTCATCTGCCAGTTAATGAGATAGTCAACCCCGAAATGAAGACAAACGGTGAAACCAGTAATGAGTTAAACGCTAATGACTCGAAACTACATGTTAATGGCCTTGAGAGAGAACAGAAAATTAATGGAGCTCAAAAATGTGATAATGGACACAGTAGTGATATCCACAACAACGGCAGTCTTGAACAAGGACTGTCGGATGTACGACGAGACTCCCACGGAGAACAAAATCCTTCAATTGTTGGGATCTTAGGAGATCAACACGGCCATGCTGAGCAGAGGTTGGCGGCCCGTCGCGCGGCGCGTGCTGAGGCCCGCGAGATCCGCATGCGGGAGCTGGAGCGACAGCAGCGGGAACAGGAGGACCATGCAGACAAGGCCTATGACATGTATGCAGAGACGGTGGGGCGGCGCGGAGGCCCGCGGCTGGCGGCGCTCAGCCCCGGCGGCGTACACTCGCCGCGGCGGAGCTCGGAGGACTCCGCCGACGACACCTTCAGCATCAAGGACCTCAGGCACGAGTTGAAAGAAGTGGAGGAGAAATTCCGCAAGGCGATGATACTGAATGCTCAGCTGGACAATGACAAAGCTGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGATAGGATAGAGGAGCTGCACGAGGAGTATGCACAACTACAGCGCGAGCACAAGGAGAAATGTTCAGCACACGAGCGTTTAAAACGCGAGCACGTGTCGCTGGAGCGCGACGTGTGCGCGGCGCGGGACGCGGTCCGCGCGCgggacgccgccgccgccgccgccggcttcGTGTTCGTGGAGGCGGcggccgcccccgcccccgcccccgcccccgcccccgccgccgcccccgccgagGGCTTCGGCTCCGTGCCGCCGCTCGCGCTCGTCTCGCACCAGTCCGAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTCGacgtGCGATTGCAGAAGTTGTTGACGTCGAAGCAGTCGCTGGAGTCCGAGGTTCGCAAACTGAAGCTGCAGCTGAACGAAGAGAGGTCGGCGCGGCAGAACGGCGTCGCCAACCACCACGACCAGGAGTACGAGAACGAAATGGAGACGCTCCGCAAGAGCGTGGCGGAGGCGAAGGCGCGCGCGGCGCGGGCCGAGGCGGAGGCCGCGCTGCAGGCGGCCGGCGTGGCGCGGCTCGAGGCGCAGGTGGCCCGGCTCAAGGCGCGCCAGGACCACCAGGACGAGCACGAGGACCAGCTCAAACAGGAGCGGCGGCGGCTGCAGCGAGAGGCTCGGGAGGCGCTCAACCGCGTCGAGGAGTTGGAGACGGAAAACAGCCACCTCACCAAGCGGCTGGACAAACTCAAGAACGCCAAGTCTGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGYLSKLVTSDNSDEESGDAFTDGDFEDSDEETVIVRNGDANSSHLPVNEIVNPEMKTNGETSNELNANDSKLHVNGLEREQKINGAQKCDNGHSSDIHNNGSLEQGLSDVRRDSHGEQNPSIVGILGDQHGHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGPRLAALSPGGVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHVSLERDVCAARDAVRARDAAAAAAGFVFVEAAAAPAPAPAPAPAAAPAEGFGSVPPLALVSHQSEQLLNDAGEGTLDVRLQKLLTSKQSLESEVRKLKLQLNEERSARQNGVANHHDQEYENEMETLRKSVAEAKARAARAEAEAALQAAGVARLEAQVARLKARQDHQDEHEDQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00648007;
- 90% Identity
- -
- 80% Identity
- -