Efla019562.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_905163395.1
- Location
- LR990857.1:15820007-15833621[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-78 2e-73 248.2 24.2 1 271 128 395 128 415 0.89 2 2 1 3.4e+04 -5.7 11.6 209 267 412 468 389 486 0.51
Sequence Information
- Coding Sequence
- ATGGGCAATCAATCCAAGTTGGCAAATTCCGACAATAGTGACGAGGAAAGCGGTGACGCGTTTACGGACGGTGATTTCGGTGACAGCGATGATGAAACGGTAGTCGAAAGGAATGGAGGCACTAGAACTAACTACATACCTGTTAATGATGCAGTAAACGTCATTCCAAAGAAGACGAACGACAATGACTCAAATGCTAATGACTCCAAACAAACAAACGGTTTGGACAAATCGAAGTTAAACGGAGTCAAAACTCATGACAATGGACACAGTAGTGAAATAGATGGTAGTAGCTTCGAAAATGGATCAGATGTACGCCGGGACTCCCACGGGGAGAATAATCCATCTATTGTCGGAATTATAGGAGACCAACACAGTCATGCCGAGCAGCGGCTGGCGGCGCGGCGAGCGGCGCGGGCGGAGGCGCGCGAGATCCGTATGCGCGAGCTGGAGAGGCAGCAACGGGAACAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCTGAGACGGTGGGTCGCCGCGGCGGCACGCGGCTGGCCGCCCTCAGCCCGGCCGGCGTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGCAGACGACACCTTTAGCATCAAAGACCTCCGGCACGAATTAAAGGAAGTAGAAGAGAAATTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAAGCGGCGCTCAGCTACAAGCTGGAATTACTTAAGGACCGCATCGAAGAGCTGCACGAGGAGTACGCGCAGCTTCAGCGCGAGCACAAGGAGAAATGCTCAATGCACGAGCGTTTAAAACGCGAGCACGTCTCGCTCGAACGGGAAGTGGCGGCCGCACGGGACGCAGTGCGGGCAAGAGACGCGGCCGCTGCGAACGCCGGATACGCGTTCGTGGACGCCGCTGCGGCCGGCGACGCTGCCAACGCCGCCGGCGACGGCTTCGGCTCCGTGCCGCCGCTGGCGCTAGTGAGCCACCAGTCCGAGCAACTGCTCAACGACGCCGGCGAGGGCACGTTAGACGTGCGGTTGCAAAAGCTGTTGAGCTCGAAACAGTCGTTGGAGTCGGAGGTGCGTCGGCTGAAGCTGCAGCTGAACGAGGAGCGCTCGGCGCGGCAGAACGGCGCGGCCGGCCACCGCGAGCTGGAGTGCGAGTCGGAGCTGGACACGCTGCGCAAGAGCTGCGCGGAGGCCAAGGGCCGCGCGGCGCGCGCAGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGTGGCAAGGCTGGAGGCGCAGCTGCAGCGGCTGAAGGCGCGCCAGGACCACCAGGACGGCCACGAGGAGCAGCTCAAGCAGGAGAGGCGGAAGCTGCAGAGAGAGGCTCGTGAGGCGCTCAACCGCGTAGAGGAGCTTGAAACTGAAAACAGTCACCTAATCAAACGGCTCGACAAACTCAAGAACGCCAAGTCGGCACTGCTTAAGGACCTGTGA
- Protein Sequence
- MGNQSKLANSDNSDEESGDAFTDGDFGDSDDETVVERNGGTRTNYIPVNDAVNVIPKKTNDNDSNANDSKQTNGLDKSKLNGVKTHDNGHSSEIDGSSFENGSDVRRDSHGENNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAGVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALSYKLELLKDRIEELHEEYAQLQREHKEKCSMHERLKREHVSLEREVAAARDAVRARDAAAANAGYAFVDAAAAGDAANAAGDGFGSVPPLALVSHQSEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRRLKLQLNEERSARQNGAAGHRELECESELDTLRKSCAEAKGRAARAEAEAALQAAGVARLEAQLQRLKARQDHQDGHEEQLKQERRKLQREAREALNRVEELETENSHLIKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00833022;
- 90% Identity
- -
- 80% Identity
- -