Hcos018201.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000338.1:834288-836597[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-11 4.3e-08 34.0 0.0 2 39 16 53 15 58 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGCAACTATATACGAAAAACAGATCGAGGCAAATGGAACGAAGAAGATATGAGAAGAGCAGTAAATGCTGTTCTTACTGATAGAATAGGATTTCTTCGAGCCTCGGCTACTTACGATGTTCCGAAGTCGACCTTAGAACGACGAGTAAGAAAAGCTCGTGAAACTGTTAATGCCGACACTGATTCTGATAACGACTGCGGGAAAAAACATTTGGGACGattcaaaactgttttcacAGCCGAGCAAGAAAATGAGCTGGCGGAGTATGTGAAATCTATGGAAGCACGGCTTTTTGGTTTAACAGGAAAAGAGCTTCGTATTATAGCTTATCAGTTGGCTCAGCGGAATCACATAGATAACCCATTTAATACAGAAACTGGTATGGCAGGAGAAGATTGGCTCAGCGGGTTTTTAAAACGACACCCTGATCTAGCATACAGACGCCCAGAACCAACATCAGCTGCAAGAGCGATGGGTTTTAACAGAGTGGCAgtcaacaatttttttacattgtTGGAAAATGTAATAGATAAACATAAACTGACGCCTGAAAGGATCTACAATGTAGACGAAACGGGGATCAGTACAGTTCCAAAAAGTCAATCTAAGATATTGTCAATGAAGGGCCAGAAGCAAGTCGGCTGCCTCTCATCAGCAGAGAGAGGCCAGTTGGTCACTGCTGAAATTTGTTTTAATGCCGTTGGCACCTATGTCCCGCCAATGCTAATATACGCTCGGAAGCGGATGAAAGAAGAACTTTTGGATGATGCTCCGTCAGGGTTTTGGGGCACTTGCAGTGACAATGGCtggattacaataaaaatattttttgattggTTTAAATCATTCGTGCAGTTTGCACAACCAACAAAAGAAAAGCCTGTATTGCTTCTGTTAGACGGTCACTCTTCACATACCAAAAATATTAACCTAATAGATTATGCAAGAGAAAATAATGTGATTTTATTATGTACACCACCACACTGCACTCACAAATTGCAGCCTTTAGACGTGTCTTTCATGAGACCTTTAAGCACGTACTATAGTGCAGAAGTGAAAAAATGGCTGAGAGATCACCCTGGTCGCGTGGTTACACCATATCAAGTGGCAAAACTTTTTGGACAAGCTTACTTAAAAGCAGCCACAATGCTCACAGCCATAAATGGATTTCGGAAATGTGGTATATGGCCACtagataaaaatgtttttacggaTGCTGATTTCATAGCTGCAGAGACGACTAACACAGAAAATCTGGCAAGAGAAGAGCTAAATGTGGAAAATGCTCCATCAACTCAATCATCCGAACCAGCAATCACTGAAGAAAATTTATCGCGGCCATCCCCTTCAGCTCACCTTGGACAAATTCCGTCTGCAACCCAGCAAAATAATGTACCTTCTTCAGCTATTTGTTCTCAGGCTAAAAATGGTCGTGGTTTGTCAGAAAATACAGAAAACATTATTTCTAATCCAAACTTACAAATTGATAAAGGGAGTGTTCCAGAGCCTCTGATATCCTCAGAAAATGCTGTCCATCCAGTTTTATCCACTGAAAAAGAAGATATTGTTGAACCAGCCACATCTTTTTCGAATAACAATGATGCCCCGGTCTCGTTGAATTCTCAAATTGACATTTCTATGACTACCACGTCTTCCCAAAACGTTGCTGCAGATGCTAACTTCAATAGATATTCTCCCGAGATTATTAATACTAGAAAGAACCCTGAACAAACATTGGCCGAACAACCTTCGACGTCAACATTTCGAGCTAAAGACAAAACTCCCGAAAGGAAAATAAAAAGAGTAACTTCTTTTCTGGTAAGTCCTGAAAATATTGTGGCTATACCTAAAGAAGTTAGGACTCAGGAGAGAAAGACTAGGAAACGAGGAAAGACTGCAATACTAACTGAATCACCTTACAAAAACGAACTCatgaaatatataagtattaaagaaggtaaaaataagaaaaagacTGATAATCAAGTGACTGAAAAAGGTAAAAAACTAATAAAGAAACCTGGAAAAAAGACTGCAAAGAAGATTAAAAAGACAACTGACAAGGAAAACCTGCAGAAAAAGCGTCAAACCAAAAGGTGCAAAAAAGAAACTGAATCGGAAGATAGTTCATCCCAAGAAGAGGATGATGACTGTGCTTGCATCTATTGTGGGTACTTATACTCAGATTCAACCGAAGGTTGGGTCATCTGCGGCGTGTGCCACGGTTGGGCTCATAATTCATGTGCCGGAGTAGATGAGGAAGACGAAGAGGCACACATTTGTGAACGCTGTCTACCCGATTAA
- Protein Sequence
- MVRNYIRKTDRGKWNEEDMRRAVNAVLTDRIGFLRASATYDVPKSTLERRVRKARETVNADTDSDNDCGKKHLGRFKTVFTAEQENELAEYVKSMEARLFGLTGKELRIIAYQLAQRNHIDNPFNTETGMAGEDWLSGFLKRHPDLAYRRPEPTSAARAMGFNRVAVNNFFTLLENVIDKHKLTPERIYNVDETGISTVPKSQSKILSMKGQKQVGCLSSAERGQLVTAEICFNAVGTYVPPMLIYARKRMKEELLDDAPSGFWGTCSDNGWITIKIFFDWFKSFVQFAQPTKEKPVLLLLDGHSSHTKNINLIDYARENNVILLCTPPHCTHKLQPLDVSFMRPLSTYYSAEVKKWLRDHPGRVVTPYQVAKLFGQAYLKAATMLTAINGFRKCGIWPLDKNVFTDADFIAAETTNTENLAREELNVENAPSTQSSEPAITEENLSRPSPSAHLGQIPSATQQNNVPSSAICSQAKNGRGLSENTENIISNPNLQIDKGSVPEPLISSENAVHPVLSTEKEDIVEPATSFSNNNDAPVSLNSQIDISMTTTSSQNVAADANFNRYSPEIINTRKNPEQTLAEQPSTSTFRAKDKTPERKIKRVTSFLVSPENIVAIPKEVRTQERKTRKRGKTAILTESPYKNELMKYISIKEGKNKKKTDNQVTEKGKKLIKKPGKKTAKKIKKTTDKENLQKKRQTKRCKKETESEDSSSQEEDDDCACIYCGYLYSDSTEGWVICGVCHGWAHNSCAGVDEEDEEAHICERCLPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338611;
- 90% Identity
- iTF_00832843;
- 80% Identity
- -