Hcos011396.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000198.1:84666-87252[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-11 4.3e-08 34.0 0.0 2 39 16 53 15 58 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGCAACTATAAACGAAAAACAGATCGAGGCAAATGGAACGAAGAAGATATGAGAAGAGCAGTAAATGCTGTTCTTACTGATAGAATAGGATTTCTTCGAGCCTCGGCTACTTACGATGTTCCGAAGTCGACCTTAGAACGACGAGTAAGAAAAGCTCGTGAAACTGTTAATGCCGACACTGATTCTGATAACGACTGCGGGAAAAAACATTTGGGACGattcaaaactgttttcacAGCCGAGCAAGAAAATGAGCTGGCGAAGTATGTGAAATCTATGGAAGCACGGCTTTTTGGTTTAACAGGAAAAGAGCTTCGTATTATAGCTTATCAGTTGGCTCAGCGGAATCACATAGATAACCCATTTAATACAGAAACTGGTATGGCAGGAGAAGATTGGCTCAGCGGGTTTTTAAAACGACACCCTGATCTAGCATACAGACGCCCAGAACCAACATCAGCTGCAAGAGCGATGGGTTTTAACAGAGTGGcagtcaacattttttttacattgttgGAAAATGTAATAGATAAACATAAACTGACGCCTGAAAGGATCTACAATGTAGACGAAACGGGGATCAGTACAGTTCCAAAAAGTCAATCTAAGATATTGTCAATGAAGGGCCAGAAGCAAGTCGGCTGCCTCTCATCAGCAGAGAGAGGCCAGTTGGTCACTGCTGAAATTTGTTTTAATGCCGTTGGTACCTATGTCCCGCCAATGCTAATATACGCTCGGAAGCCGATGAAAGAAGAACTTTTGGATGATGCTCCGTCAGGGTTTTGGGGCACTTGCAGTGACAATGGCtggattacaataaaaaattggttgcctgtaaagtcgTTTGCACAACCAACAAAAGAAAAGCCTGTATTGCTTCTGTTAGACGGTCACTCTtcacatatcaaaaatattgacCTAATAGATTATGCAAGAGAAAATAATGTGATTTTATTATGTACACCACCACACTGCACTCACAAATTGCAGCCTTTAGACGTGTCTTTCATGAGACCTTTAAGCACGTACTATAGTGCAGAAGTGAAAAAATGGCTGAGAGATCACCCTGGTCGCGTGGTTACACCATATCAAGTGGCAAAACTTTTTGGACAAGCTTACTTAAAAGCAGCCACAATGCTCACAGCCATAAATGGATTTCGGAAATGTGGTATATGGCCACtagataaaaatgtttttacggaTGCTGATTTCATAGCTGCAGAGACGACTAACACAGAAAATCTGGCAAGAGAAGAGCTAAATGTGGAAAATGCTCCATCAACTCAAACATCCGAACAAGCAATCACTGAAGAAAATTTATCGCGGCCATCCCCTTCAGCTCACCTTGGACAAATTCCGTCTGCAACCCAGCAAAATAATGTACCTTCTTCAGCTATTTGTTCTCAGGCTAAAAATGGTCGTGGTTTGTCAGAAAATACAGAAAACATTATTTCTAATCCAAACTTACAAATTGATAAAGGGAGTGTTCCAGAGCCTCTGATATCCTCAGAAAATGCTGTCTATCCAGTTTTATCCACTGAAAAAGAAGATATTGTTGAACCAGCCACATCTTTTTCGAATAACAATGATGCCCCGGTCTCGTTGAATTCTCAAATTGACATTTCTAAGACTACCACGTCTTCCCAAAACGTTGCTGCAGATGCTAACTTCAATAGATATTCTCCCGAGATTATTAATACTAGAAAGAACCCTGAACAAACATTGGCCGAGCAACCTTCGACGTCAACATTTCGAGCTAAAGACAAAACTCCCGAAAGGAAAATAAAAAGAgtaacttcttcttttctggtaagtCCTGAAAATATTGTGGCTATACCTAAAGAAGTTAGGACTCAGGAGAGAAAGACTAGGAAACGAGGGAAGACTGCAATACTAACTGAATCACCTTACAAAAACGAACTCATGAAAGATATAAGTATTAAAGAaggtaaaaataagaaaaagacTGATAATCAAGTGACAGAAAAaggtaaaaaacaaataaagaaaCCTGGAAAAAAGACTGCAAAGAAGATTAAAAAGACAACTGACAAGGAAAACCTGCAGAAAAAGCGTCAAACCAAAAGGTGCAAAAAAGAAACTGAATCGGAAGATAGTTCATCCCAAGAAGAGGATGATGACTGTGCTTGCATCTATTGTGGGTACTTATACTCAGATTCAACCGAAGGTTGGGTCATCTGCGGCGTGTGCCACGGTTGGGCTCATAATTCATGTACCGGAGTAGATGAGGAAGACGAAGAGGCACACATTTGTGAACGCTGTCTACCCGATTAA
- Protein Sequence
- MVRNYKRKTDRGKWNEEDMRRAVNAVLTDRIGFLRASATYDVPKSTLERRVRKARETVNADTDSDNDCGKKHLGRFKTVFTAEQENELAKYVKSMEARLFGLTGKELRIIAYQLAQRNHIDNPFNTETGMAGEDWLSGFLKRHPDLAYRRPEPTSAARAMGFNRVAVNIFFTLLENVIDKHKLTPERIYNVDETGISTVPKSQSKILSMKGQKQVGCLSSAERGQLVTAEICFNAVGTYVPPMLIYARKPMKEELLDDAPSGFWGTCSDNGWITIKNWLPVKSFAQPTKEKPVLLLLDGHSSHIKNIDLIDYARENNVILLCTPPHCTHKLQPLDVSFMRPLSTYYSAEVKKWLRDHPGRVVTPYQVAKLFGQAYLKAATMLTAINGFRKCGIWPLDKNVFTDADFIAAETTNTENLAREELNVENAPSTQTSEQAITEENLSRPSPSAHLGQIPSATQQNNVPSSAICSQAKNGRGLSENTENIISNPNLQIDKGSVPEPLISSENAVYPVLSTEKEDIVEPATSFSNNNDAPVSLNSQIDISKTTTSSQNVAADANFNRYSPEIINTRKNPEQTLAEQPSTSTFRAKDKTPERKIKRVTSSFLVSPENIVAIPKEVRTQERKTRKRGKTAILTESPYKNELMKDISIKEGKNKKKTDNQVTEKGKKQIKKPGKKTAKKIKKTTDKENLQKKRQTKRCKKETESEDSSSQEEDDDCACIYCGYLYSDSTEGWVICGVCHGWAHNSCTGVDEEDEEAHICERCLPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338611;
- 90% Identity
- iTF_00720161; iTF_00720162; iTF_00720163; iTF_00007945; iTF_00736555; iTF_00720156; iTF_00178013; iTF_00720157; iTF_00720158; iTF_00720159; iTF_00720160; iTF_01090625; iTF_00751971; iTF_00751972; iTF_00751973; iTF_00751974; iTF_00751975; iTF_00007944; iTF_00832844; iTF_01359645; iTF_01085082;
- 80% Identity
- -