Basic Information

Gene Symbol
znf423
Assembly
GCA_963921915.1
Location
OY998132.1:10994348-11004886[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 1.5e-05 0.0014 19.1 1.5 1 23 97 119 97 119 0.97
2 22 0.2 19 6.1 4.9 1 23 125 147 125 147 0.98
3 22 1.1e-06 0.0001 22.7 4.1 1 23 153 175 153 175 0.99
4 22 0.00022 0.021 15.4 0.2 1 23 181 203 181 203 0.99
5 22 8.3 7.8e+02 1.0 0.3 3 23 279 301 277 301 0.79
6 22 0.013 1.2 9.9 0.1 1 23 366 389 366 389 0.97
7 22 0.25 24 5.8 0.0 2 23 400 422 399 422 0.88
8 22 0.2 19 6.1 0.1 3 23 492 512 491 512 0.97
9 22 0.0036 0.34 11.6 0.0 3 23 528 548 527 548 0.96
10 22 0.00056 0.053 14.1 1.4 1 23 557 580 557 580 0.93
11 22 2.3 2.2e+02 2.8 0.1 1 23 585 608 585 608 0.91
12 22 1.1 1e+02 3.8 2.2 2 23 678 699 678 699 0.96
13 22 0.0011 0.11 13.2 0.2 1 23 704 727 704 728 0.95
14 22 1.4 1.3e+02 3.5 0.1 2 23 796 819 795 819 0.88
15 22 0.00018 0.017 15.7 1.1 2 23 835 857 834 857 0.96
16 22 1.1 1e+02 3.8 0.6 1 12 866 877 866 889 0.76
17 22 3 2.8e+02 2.4 0.1 2 23 897 918 896 918 0.95
18 22 0.0084 0.8 10.4 0.1 1 23 1102 1125 1102 1125 0.90
19 22 0.14 14 6.6 0.4 1 23 1135 1158 1135 1158 0.95
20 22 4.2 3.9e+02 2.0 0.2 2 23 1171 1192 1170 1192 0.93
21 22 0.0041 0.39 11.4 1.1 2 23 1201 1223 1200 1223 0.94
22 22 0.13 12 6.7 1.4 1 23 1230 1253 1230 1253 0.96

Sequence Information

Coding Sequence
ATGCTTTTCAAAGGCAATAGTTCGCGATTGGAATTGCTGATTGGTAAGATCCAAGCTCACAAAGAATCACCGTCGCCACCTCGAGCTGATAAATGCAGCCCCAGAGCCAAAGATGCACTGGGTACCGGAAGTTCATCCTGGCACAGCGAAGATGGGGGAGCGAATTCGCGGCGCGGTGGGGAAACTCCATCGTCCTGCGCGACACCAACATCGGCGAGTTTTCCGTCGGAACCGGAAGTCGATTCAGAAATGGGTATCAGTGCCGATGGTAACAATCCCGCAGCACCTTATCCCTGCCAATTTTGTGACAGGACGTTTCCTCGACTCAGTTACTTGAAGAAACACGAGCAGAATCACGGCGATCAGATGCCCTATCGTTGCAGTTGGTGTTCGCGTTTGTTCAAGCACAAAAGGAGCAGAGATCGTCATGTGAAATTGCACACCGGTGATCGACGATACCGTTGTTCTCACTGCGAGGCTGCATTTTCCAGAAGCGATCATCTGAAGATTCACATGAAAACGCACGACAACCAAAAGCCTTATCAGTGTACAGCGTGCTCGCGAGGCTACAACACAGCTGCAGCGTTAACATCGCACATGCAGTCGCACAAGAAGCACCCGAGTCCGAATCAGGCAACCAAGATGGACTTGGATTACGGACGTCGAAGTGTGTCGTCTCATAGCACGACTTCACCGCCGATTCAGAATTCACCTTCTCCGAGTTTGAATCTCAGTATGAACGTCAAAAACGCGATGAAATCGCATCAATCGATTTATAACAACGGCGCGAGTGGAGCGAAAACTCCGATTATCAACTCGCCGCTGAAACTCGCTTGCATGTATTGTACGAAGGACTCTTTCACGAGTATGCAGCAGTTGCAGTTGCACGTTCAGGCGATGCATCAGGCGATCCTGAACGGCGGGAATTTGGACGTCGAATCGGCCGGCCACGTTAAATCAGAAGCGAACAACTCAAAGTGTCGTGACCGGATGACCGCGGACAGGAACGGTAGCAACGATAACCCGAGAACGTATCATTTCGAAGAACACGAAAAGTCCGTGGAAAGGGACAAAGGGAGCGCAGGAGAAAAGGGTTTTTCCTGTGGCCAGTGTACGATGAAGTTATCCGGGCTCAGCGAGCTGAGGGACCACATGGTGACGATCCATCGGAGCGAAAATTTAGGCTCGACTTTGATGATGTGTCCTCTGTGTGGAATCCCCTGTGCCTCAGCGGCCTCGTACGCGGAACACTACGTGCTCCAGCACTGCGAGAACCGACGCATGCCTTCGAAAGATTCGATTCATCGCGATTGGGAAAGTGTAAAGATAAACGGAAGCCACGAAAACAGTCGACCTGGTTCGGAGGATCGCGCCACCGCGAGCAGATCTGACCTCGGAACTTCGGGGCCTGCTGACTTGACGAAGAAACAATCGAGACCCAATGACACTGGCTACACAACGGGCACACTCCTTTGTGGACAGTGTGGAGCTGCCCTGAAGGACTTTGAATCATTCCGCGAACATCTCGCTCGCCATCTTCAGGCTGATCAACAAAGCAACGAGGTCTTACCCAGGAATCCATGTCCAAAATGTGGCGCAAGCTTCCCGGAACGGGAGGACATGCTGGTCCATTTAACGAAACATTATCTTGGCCAAGTGACGAAAGAGTACACGTGTGCTGCTTGCAAAAAGTGTTACCCTCATCCGGACCTCTTACAGCGGCATCTTCTAGACGCCCACGCTCATCATCTTTACCGATGTGCCGTTTGTCGCGACACGTTTGATTCCCGGGTAGCCATCCAGGTCCACTTCGCTGTCAAGCACAGCCAGGAAAGCCAAGTTTATCGTTGCAACGTTTGCATCAGTGAGACTTCACCTGGGAATTCGCCCAGCGAAGCCAGAAATTACTTCCGAACTGAAGCGGAAATGGCCAATCACGTCAGATCGGTCCATGCACCACCTTCCGTCGTCAACGAGAGTCCCCTGCGGCGCAGTCCGATTCCCACACCCGCTGCCACCTCGACCACTCCCCGATGCGTTTTTTGTGGCGTCTGCTGCAACACGGATCTAGAACTTCAACTCCATCTGGCTAGTCATTCGGCCAACTTGTATCGATGCCCTATTTGTAGGGAAGGCTTCCCGGTTGAGTTCCTGCTAGAGAGACACATAGCTCAATCCCATCACGCCATCAGTGACCGCAATGATTCCAGAGAAAATGGAAGAGCCTTCAGAGCTTCAAGGTCCCAAGATGAAACGACGAGATCCCAGAAGCGTGGACGATCACCAGCCTCGAGTAACAACAACTCCTTGAACCAATGTGACAACAATAACAAACGAGCGAATTACGGAGCGACCAATGGTACATCTCTGACATCGGGAGTCCAGCAATGCGAGCTTTGTGAGAGAGCGGAATTCGCGACGGAAGCAGAGCTTCAGGCGCACAAGAAATTGGTCCACACGCCGGTCAAGTTGCAAGCAAAGTCGTTGCCGTTGCTCAGTATGACTTGCGCCTACTGCGGAGAGGTTTGCCGTTCGCGAACTGATTTGGAGTCGCATACGAGGATCCAGCACGCTTCGAACGAGCCTGGTGGACGTCACAAGTGTAACATTTGCGACGAAGTCTGTCCGTCCGGTGGAATATTGGCGGAACACAAACTTCAGACGCACTGCAAAATCCAATTGAGCGATACTTGTGTCGTGTGTCGTGGCACTTTAGTCAATGAAGCTCAATTCATCGAACACGTTCAACGACACAGTTTGGAGAATGGTGACCCTCAGCAGCGATTGGACAACACGGTGCCTCTTTTACCTGCCGCCTGCGTCGTTTGCAGACAAACGTTGATCAGTGATTTGGAATGTCGCCTTCACGCCAGCCACCACTTGAGGAACTCCAATGTTTCGCAAATCACGAATTCCACTCCAAGTCCCAATCAGCATTCCAcccaacaacagcaacaacaacagcagcaacatcTCTTCCAATCAAACAGCTTGAGCTGTTGCTTGTGTCTGCGAGAATTCAGTGCCGATGACTTTGTCAGTTTACCATCGAATCCCGTTGGCACTGGAGGTCCGCCTTTGAGAGTTTGCAAACCCTGTTACGTTAGACACTCGCAAGGATTGCCCATACTCAATTCCCCTTATGAACACGTTAGAAAACCCAATACCGAACGAAGCAACTGGATCAATGCTAAGGATCCGACCAGCAGGGACACTTCCAGAGAACGGTGGGACATTGACAGATCCTTCAATGTCGGCGAAACCCATCAGAGTGCCAAAACAAGAATCACCGAGTCCGATGACTTCAGGTGCGATGAGTGCGGCATcaagtttgaaaattctgaCGAAGCTGACATTCACAGGGTTAAGGAACACGGAAAACTCTCAAGCAACTCTAATACTTACACCTGCATACAGTGCCAGATGTCCTTTccaactgaagaaaaaattcgacaacaCGTTCGTCAGGTCCATTTGGAATCACCCAGCAAGGCATCGCTGGATGCACTTCGTTGTCATCTTTGCGTTTTCGAAGCCAGCAGTCCTCTCCAGCTTCAGGGGCATTTGATCGAACACACTTTCGCAGGTTGTGCGGGCCTCACGTGTTACATTTGCCAGAGTCTCTTCACAACACCTCACGCTCTCCagAATCACATGCTCCAGCAACATGGACTCGGTGCGAGGCCGTACGACTGCAATAATTGcagcttgaaatttttcttccgcatCGAATTGGATCATCACGTGATGATGGCGCACCAAAGAAGCGAGGCGCCATCCCCCACGGTGGACGTCGGACAGGAAATGCCGACGGAAAATCAAACGAGGACGGAGCCAGAAGAGCACAGCAAGAAAGAGACGaaggataaaaattcagaggaCAATGGATCTGCGAAAAGGATTACGGTGAAAGAAGAAATCGTTCACAGtcccgaagaaaaagaattccaCATCGATGACGACGTCGAGCAAGATAATGACGAAGGAGCAAAAAGGGAGAAGTCGAATTTGTCGGATACGAAGACTGAAATGTTCAGCGTACAGCACGGAGAAGACCAGATGCAATCTTGA
Protein Sequence
MLFKGNSSRLELLIGKIQAHKESPSPPRADKCSPRAKDALGTGSSSWHSEDGGANSRRGGETPSSCATPTSASFPSEPEVDSEMGISADGNNPAAPYPCQFCDRTFPRLSYLKKHEQNHGDQMPYRCSWCSRLFKHKRSRDRHVKLHTGDRRYRCSHCEAAFSRSDHLKIHMKTHDNQKPYQCTACSRGYNTAAALTSHMQSHKKHPSPNQATKMDLDYGRRSVSSHSTTSPPIQNSPSPSLNLSMNVKNAMKSHQSIYNNGASGAKTPIINSPLKLACMYCTKDSFTSMQQLQLHVQAMHQAILNGGNLDVESAGHVKSEANNSKCRDRMTADRNGSNDNPRTYHFEEHEKSVERDKGSAGEKGFSCGQCTMKLSGLSELRDHMVTIHRSENLGSTLMMCPLCGIPCASAASYAEHYVLQHCENRRMPSKDSIHRDWESVKINGSHENSRPGSEDRATASRSDLGTSGPADLTKKQSRPNDTGYTTGTLLCGQCGAALKDFESFREHLARHLQADQQSNEVLPRNPCPKCGASFPEREDMLVHLTKHYLGQVTKEYTCAACKKCYPHPDLLQRHLLDAHAHHLYRCAVCRDTFDSRVAIQVHFAVKHSQESQVYRCNVCISETSPGNSPSEARNYFRTEAEMANHVRSVHAPPSVVNESPLRRSPIPTPAATSTTPRCVFCGVCCNTDLELQLHLASHSANLYRCPICREGFPVEFLLERHIAQSHHAISDRNDSRENGRAFRASRSQDETTRSQKRGRSPASSNNNSLNQCDNNNKRANYGATNGTSLTSGVQQCELCERAEFATEAELQAHKKLVHTPVKLQAKSLPLLSMTCAYCGEVCRSRTDLESHTRIQHASNEPGGRHKCNICDEVCPSGGILAEHKLQTHCKIQLSDTCVVCRGTLVNEAQFIEHVQRHSLENGDPQQRLDNTVPLLPAACVVCRQTLISDLECRLHASHHLRNSNVSQITNSTPSPNQHSTQQQQQQQQQHLFQSNSLSCCLCLREFSADDFVSLPSNPVGTGGPPLRVCKPCYVRHSQGLPILNSPYEHVRKPNTERSNWINAKDPTSRDTSRERWDIDRSFNVGETHQSAKTRITESDDFRCDECGIKFENSDEADIHRVKEHGKLSSNSNTYTCIQCQMSFPTEEKIRQHVRQVHLESPSKASLDALRCHLCVFEASSPLQLQGHLIEHTFAGCAGLTCYICQSLFTTPHALQNHMLQQHGLGARPYDCNNCSLKFFFRIELDHHVMMAHQRSEAPSPTVDVGQEMPTENQTRTEPEEHSKKETKDKNSEDNGSAKRITVKEEIVHSPEEKEFHIDDDVEQDNDEGAKREKSNLSDTKTEMFSVQHGEDQMQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2