Hcun013842.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- -
- Assembly
- GCA_003709505.1
- Location
- PKRV01001248.1:426323-437469[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.071 13.7 2.2 1 23 246 268 246 268 0.99 2 11 0.012 0.78 10.4 0.1 1 23 275 298 275 298 0.96 3 11 0.00018 0.011 16.2 0.4 1 23 329 352 329 352 0.96 4 11 0.002 0.13 12.9 1.4 1 23 356 379 356 379 0.97 5 11 0.00068 0.042 14.4 0.6 2 20 392 410 391 412 0.92 6 11 2e-05 0.0012 19.2 1.1 2 23 422 445 421 445 0.95 7 11 0.0014 0.087 13.4 1.2 2 23 452 474 451 474 0.96 8 11 3.7e-05 0.0023 18.3 0.4 3 23 494 514 492 514 0.97 9 11 4e-05 0.0025 18.2 1.7 1 23 520 542 520 542 0.99 10 11 1.6e-05 0.00098 19.5 3.8 1 23 548 570 548 570 0.94 11 11 4.6e-06 0.00029 21.2 3.7 1 23 576 599 576 599 0.98
Sequence Information
- Coding Sequence
- ATGGAGGATATATTGGTTTGCAGAGTATGCCTCGCGTCAGGGgtaaaattatatagtatatgcAATAACAATCTTAAAAAAGCTTATGTTAATCTTACAGGAAACGatATGTCAATAACAGACATATATCCACAGTACCTCTGCAGTTTCTGCCAAAACCATCTTGTAAAGAGCAACAGGTTCAAAGAGAGATGTATAGAAACAGAGGAATTACTGAAACAAGCGGCTATGGAACTACCAATgCTAACACTCGATCATATCCACACTCTATCTCTATCTCTGTCTCCTACACACTCCCTCTCAACTTCTGCCATCGACTCTTTTACGACATTGAACCAGAAAATCGTAACACATATTAAGGCAGAAGCTTTCGACATAAAAGAAGAATCAACAGACCACAGCGACGAAGAGCCATTAGCTAAAAAAGCGAAGAATATAGAGTATTCCGATTTTGAAATCGGAGATGATACTTTCGAAACGGTGGCAAAGAATATTGATTTCAAcgaatttgaaaatgaaaattacaataaagaaaagaatTCGGTGTTCTCAGATTTCGAATTCGAAACGGACACGTTTGAGAAAGAGGATTTTAAGCCGAAACCTGTTGAGAACACAGAAGAGAATGTTGActtttggaataaaaaaatcatagaaataatagtattaaGTAAAGAACAGCAGATAGAAGAAATATTGGCGAGAAAAAAGACTTATAATTATATGagttctttttataaatgcGAGTTGTGTTATAAAGGATTTATGAAGGATTCGACTTATAAAAATCACATGATAAGACATGACccaACCACCGGCCCATACGCCTGCGAGATATGCCAAACAAGATGGTCAGACCTCCGTTCTTTAAAAGCCCACATCGCCAAAGCCcacgaaaaaaaatacatctgcAAGCTCTGTGCTCACACCTGCAAGTCCTGCCACAGGGCTAAGGAACACCTGAACTGGCATAAAGGACACAAATTCAACTGCAATATCTGTGGGGCCTCCTTCGCCAAGTCTACCAGCTACCTGACCCATGTGAGATTACAGCATCCGTCTAAATACTGTTGTGATGTCTGCGGAGACAGTTTCATCAGTAAGAACGGCTTAAATATGCATAAGAAGAAAGCTCATAAATTGTACAAGGAATCAAATACAGACAAAGAATTGATATGCAGCATgtgtaatattcattttaaaagtaaagaagCTTTGAAAAAACACACGGATTCATCGGACAATTGTGTATGCGACCAAAGTGTATGTCCATGTATCCACTGCGGGGAAAACTTCTCCACGCCAGAACTCCTGAAGGAACATCAGAAGATCCACCAGAAAGATGAGACGGTTAAATGTGATGAGTGTAATCGCACATTCGCACACGAACGATCCTTCGGCGTGCACTACCAACGTGTCCACCTCGGGCTCAAACTCAAGCACGCGTCCAACCAACTGACCAACCGACCGCACGTCATCTGCGAGATATGCGGCAAGAAGTGCATCTCAAACGCAACTTTAATATACCACCAAAGAATACACACAGGAGAGAAACCATTCCAATGTAGTCAGTGCCCGAAGAAATTCAGTGTCCTCCAAAGACTTCAGATCCACACCCGGACCCACACTGGTGAGAGACCGTTCAAGTGTTCCCACTGTCCGAAGGCGTTTAAACATAAGGCTGCATTGAACAGACATGACAGAgtACACACCGGAGAAAAACCATATCAGTGTTCCCATTGTTCTAAATCGTTCTCTCAATCAAACTCCATGAAACTCCATGTTCGGACTGTACATCTAAAAATGCCAGGTCCCTACAGGAATAagcgtaataataaaatagaatag
- Protein Sequence
- MEDILVCRVCLASGVKLYSICNNNLKKAYVNLTGNDMSITDIYPQYLCSFCQNHLVKSNRFKERCIETEELLKQAAMELPMLTLDHIHTLSLSLSPTHSLSTSAIDSFTTLNQKIVTHIKAEAFDIKEESTDHSDEEPLAKKAKNIEYSDFEIGDDTFETVAKNIDFNEFENENYNKEKNSVFSDFEFETDTFEKEDFKPKPVENTEENVDFWNKKIIEIIVLSKEQQIEEILARKKTYNYMSSFYKCELCYKGFMKDSTYKNHMIRHDPTTGPYACEICQTRWSDLRSLKAHIAKAHEKKYICKLCAHTCKSCHRAKEHLNWHKGHKFNCNICGASFAKSTSYLTHVRLQHPSKYCCDVCGDSFISKNGLNMHKKKAHKLYKESNTDKELICSMCNIHFKSKEALKKHTDSSDNCVCDQSVCPCIHCGENFSTPELLKEHQKIHQKDETVKCDECNRTFAHERSFGVHYQRVHLGLKLKHASNQLTNRPHVICEICGKKCISNATLIYHQRIHTGEKPFQCSQCPKKFSVLQRLQIHTRTHTGERPFKCSHCPKAFKHKAALNRHDRVHTGEKPYQCSHCSKSFSQSNSMKLHVRTVHLKMPGPYRNKRNNKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360946; iTF_00441825; iTF_00157482; iTF_01198062; iTF_00823323;
- 90% Identity
- -
- 80% Identity
- -