Basic Information

Insect: Diaphora mendica
Gene Symbol: -
Assembly: GCA_949125395.1
Location: OX421313.1:11449086-11468066[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00041 0.055 15.4 1.9 1 23 247 269 247 269 0.99

2 11 0.15 20 7.3 1.1 1 23 276 299 276 299 0.95

3 11 0.017 2.3 10.2 2.0 1 23 330 353 330 353 0.92

4 11 0.00034 0.045 15.6 0.7 1 23 357 380 357 380 0.97

5 11 0.00085 0.11 14.4 0.6 2 20 393 411 392 413 0.92

6 11 0.00021 0.029 16.2 4.1 2 23 425 446 424 446 0.95

7 11 0.0018 0.24 13.4 1.2 2 23 453 475 452 475 0.96

8 11 3.2e-05 0.0044 18.8 0.4 2 23 494 515 493 515 0.97

9 11 7.8e-05 0.011 17.6 2.2 1 23 521 543 521 543 0.99

10 11 2e-05 0.0027 19.5 3.8 1 23 549 571 549 571 0.94

11 11 5.8e-06 0.00079 21.2 3.7 1 23 577 600 577 600 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00041	0.055	15.4	1.9	1	23	247	269	247	269	0.99
2	11	0.15	20	7.3	1.1	1	23	276	299	276	299	0.95
3	11	0.017	2.3	10.2	2.0	1	23	330	353	330	353	0.92
4	11	0.00034	0.045	15.6	0.7	1	23	357	380	357	380	0.97
5	11	0.00085	0.11	14.4	0.6	2	20	393	411	392	413	0.92
6	11	0.00021	0.029	16.2	4.1	2	23	425	446	424	446	0.95
7	11	0.0018	0.24	13.4	1.2	2	23	453	475	452	475	0.96
8	11	3.2e-05	0.0044	18.8	0.4	2	23	494	515	493	515	0.97
9	11	7.8e-05	0.011	17.6	2.2	1	23	521	543	521	543	0.99
10	11	2e-05	0.0027	19.5	3.8	1	23	549	571	549	571	0.94
11	11	5.8e-06	0.00079	21.2	3.7	1	23	577	600	577	600	0.98

Sequence Information

Coding Sequence: ATGGAAGATATATTGGCTTGCAGAGTATGTCTCGCTACAGGGGTGAAATTGTTCAATTTAAGTTATAACAATCTTAAAAAAGCTTACGAAAATCTAACAGGAAACGatGTGACAATACCAGACATATATCCGCAGTATCTCTGCAGTTTCTGCCAACATCTTCTTGTAAAGAGCAACAGGTTCAAAGAGAGATGTATAGAGACTCAGGAACTGTTAAAGCAAGCAGCAATGGAACTACCAAtgTTAACACTTGATCACATCCACACTCTTTCTCTGTCTCCTACACACTCCCTCTCAACTTCTGCCGTCGACACTTCCACAATATTGTATCCGGAACTCGTTACACATATAAAAGCAGAAGCATTTGACATTgttttaaaagaagaatcatcagaCCACAGCGACGAAGAACCATTAGctaaaaaagcgaaaaaaagaaaaaggaagAAAATAGAGTATTCCGAATTTGAAATCGGAGATGACACTTTTGAAACGGTGGCAAAGAATATTGATTTTTCCGAATTTGAAAATGGAACTTTCGAAAAACAAAAGAGTGCAGTATTTTCAGATTTCGAATTCGAAACTGACACGTTTGAGCCGGAGGATTTTGAGCCGAACGCAGAACAGAGtgtcgatttttttaataaagaagacatagaaataatagttttaagtaAAGAACAGCAGATAGAAGAAATATTAGCtagaaaaaaatcttataattataataattctttttataaatgcGAGTTGTGTTATAAAGGATTCATGACAGACTCAACTTATAAAAATCATATGATTAGACATGACCCgACCACAGGCTCCCACGCCTGCGAGATATGCCACACTAGATGGCCAGACCTCCGTTCCTTAAAAGCCCATACAACCACAGCCCACGAAAGAAAATACATCTGCAAACTTTGTGCCCACACTTCTAAATCCTGCCACAGGGCTAAAGAACACCTAAAGTGGCACAAAGGACACAAATTCAACTGCAAAATATGTGGGGCTTCCTTCTCCAAGTCTACGAGCCATTTGACACATGTAAGATTACAGCATCCTTCTAAATACTGCTGTGATGTGTGCGGAGAGAGTTTCATTGGACAGAACGGTTTGAATATGCATAAAAAGAAAGCTCATAAATTGTTTAAGGAATCAAAAATAGACAAAGAACTGATATGCAGTATgtgtaatattcattttaaaagtaaagaaGCTTTGAAAAAGCACACGGATTCATCAGACAATGGAATATGCAATAATACTCTATGTCCATGTTTCCATTGCGGGGAAAACTTCTCCACTCGGGAAGTCTTGAAGGAACATCAAAAGACCCACCAGAAAGAAGAGACAGTCAAATGTGATGAGTGTAACCGCACGTTCGCACACGAAAGATCGTTCGGCGTGCACTACCAGAGAGTGCATCTCGGACTCAAGCTCAACCACGCTCCCAACCAACTGAGGAACCGACCGCACGTCGTCTGCGAAATATGCGGCAAAAAATGCATCTCCAACGCGACGCTAATATACCACCAAAGAATACACACAGGAGAGAAACCGTTCCAATGTAGTCAGTGCCCGAAGAAATTCAGCGTCTACCAGAGACTGCAGATCCACACCCGAACCCACACTGGTGAGAGACCGTTCAAATGTTCCCACTGTCCGAAGGCGTTTAAACACAAAGCTGCATTAAACAGACATGACAGGGTACACACCGGAGTAAAACCGTACCAGTGTTCCCATTGTTCTAAATCATTCTCTCAATCGAACTCCATGAAACTCCATGTTCGGACTGTACATCTAAAAATGCCAGCCCCCTACAGGAATAGGCggaataataaaatagaataa
Protein Sequence: MEDILACRVCLATGVKLFNLSYNNLKKAYENLTGNDVTIPDIYPQYLCSFCQHLLVKSNRFKERCIETQELLKQAAMELPMLTLDHIHTLSLSPTHSLSTSAVDTSTILYPELVTHIKAEAFDIVLKEESSDHSDEEPLAKKAKKRKRKKIEYSEFEIGDDTFETVAKNIDFSEFENGTFEKQKSAVFSDFEFETDTFEPEDFEPNAEQSVDFFNKEDIEIIVLSKEQQIEEILARKKSYNYNNSFYKCELCYKGFMTDSTYKNHMIRHDPTTGSHACEICHTRWPDLRSLKAHTTTAHERKYICKLCAHTSKSCHRAKEHLKWHKGHKFNCKICGASFSKSTSHLTHVRLQHPSKYCCDVCGESFIGQNGLNMHKKKAHKLFKESKIDKELICSMCNIHFKSKEALKKHTDSSDNGICNNTLCPCFHCGENFSTREVLKEHQKTHQKEETVKCDECNRTFAHERSFGVHYQRVHLGLKLNHAPNQLRNRPHVVCEICGKKCISNATLIYHQRIHTGEKPFQCSQCPKKFSVYQRLQIHTRTHTGERPFKCSHCPKAFKHKAALNRHDRVHTGVKPYQCSHCSKSFSQSNSMKLHVRTVHLKMPAPYRNRRNNKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824095;
90% Identity: iTF_01360946;
80% Identity: -