Hcun007416.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyphantria cunea
Gene Symbol
-
Assembly
GCA_003709505.1
Location
PKRV01002134.1:58-21497[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2e-05 0.0012 19.2 6.8 1 23 196 218 196 218 0.98
2 13 1.9e-06 0.00012 22.4 0.2 3 23 232 252 231 252 0.98
3 13 5.5e-05 0.0034 17.8 2.0 2 23 261 282 261 282 0.98
4 13 0.0002 0.012 16.0 1.6 3 23 290 310 288 310 0.95
5 13 2.2e-06 0.00014 22.2 0.8 1 23 316 338 316 338 0.97
6 13 1.3e-05 0.00081 19.8 8.6 2 23 345 366 344 366 0.97
7 13 1.3e-05 0.00079 19.8 0.9 1 23 372 394 372 394 0.98
8 13 8.8e-06 0.00055 20.3 1.6 1 23 400 422 400 422 0.99
9 13 0.00032 0.02 15.4 1.2 1 23 428 450 428 450 0.98
10 13 0.00053 0.033 14.7 1.3 1 23 456 478 456 478 0.97
11 13 2.3e-05 0.0015 19.0 1.1 1 23 484 506 484 506 0.97
12 13 1.5e-06 9.5e-05 22.7 0.9 1 23 512 534 512 534 0.99
13 13 0.0011 0.069 13.7 3.7 1 23 613 635 613 635 0.98

Sequence Information

Coding Sequence
ATGGCTACTACTGCTGCTATTGTTAATAAACTTCAAACTttgaactttaataaaatatgtcgaGCTTGTTTGGAGACAAAAAAAGATATGAGACCTCTGTTTGAACAATTGACTGCTACAATGCTGATGGGAATATCAAAAGTGCAGGTGGAAGTGGGCGATACCCTGCCGTCCCAACTGTGCCTCCAGTGTGTGCATCAAATATCCCGCTGTCACGCCTTCAAGGAGATGGTAGAAAGGAATGATGTCGCACTCCGCGAACACGCCAAGACTCTTGCCGAGCAAGCCTTCAAAAGAGAAAGGGAAGAGAAGGAGAAACTGATTAATATGAATTGTACGGAACCTTACATGCAGTACATGGAGGTGCCTATCACCACAACTAATCAGATACTAGATGGATTCTTCAATACAACTCCGGCTCAGACACCAACCCCAGCATCTGAACTGGACTCCAAAGAGGAGTTTGAAGAAAAGaCCGAAACGACATCTAACACTCCAAAAGAAAAAGATGGTTTGAACTCTGACGAGGAGAACTATCTACAGTTGGTTGTATTTCAAGCGACATCGACGGTGTCCCCTGGCCGCCACGTTTGCAACCTCTGTCATAAGGAGTTCAAACATCCAAGGTGGTTGAAACAGCACATGAGATCTCACACTAACTGGATAAAAGCGAATTGCAAGAAACCACCAATGTGCCCCATTTGTGAAAGAACTTTTAAGGGTCCAGGTATGCTAAAAATGCACATGCGGACCCACGAGCAACGCCCTCCAAAACAGCCAACGTGCTCAGTCTGCCAACGCACCTTTCCTAGCAAAACCTTACTCTATCGCCACAGACAGACTCACTTCGAGCAGAAAACCCATTTGTGCACTGTATGCGATAAGAGGTTTTATAGCGGTTATGCTCTAAGGTCTCATATGGCGAGGCATCGTGGAGAGAGGCCTTATATCTGTTCGACTTGCGGCAAAAGCTTCTACAATCCGACGGATTTGAAGGTTCACTTCCGTCTCCACACAGGAGAAAAACCACTGAAATGTACAGAATGCAATAAAACATTCAGAAGGCATTCGACTTTGTGCCAGCATATGAAGAAACACCGTGGAATACGGAACCATGTGTGCACAGAGTGCAACAAAGGGTTCTATGAAGTGTCCAAACTCAATGCCCATATGAGAGTGCACACTGGCGAACGGCCGTATGAATGCCAGTTCTGTTCGCGTCGCTTCGCCCAGCAATCTGCCCTCATCTACCACCGGCGGACTCACACTGGGGAGAAGCCGTACAGCTGCAAGTTATGCTCAGCGAAGTTTACCACCTCCTCTGCGAGGAACAACCACATGGTCACGCATACTGGCAATAAAAGGTTCGTGTGCCCGGTGTGCTTCAAGGGCTGCACGTCACGCACGGAGCTGCGCGTGCACGCGAGCAAGCACACGGGCGAGAAGCTGTTCGCGTGCGAGCTGTGCGATCAGCGCTTCAGCTCCGCCTCGTACCTGGCCGTGCACCGCCGCCACCACTCCGGCGAGCTCAAGTACCAGTGCCTCATCTGCGGAAAAGGTTACATAGAATCAAGTTCATATAAAAAGCATATGAAGACACACGACGTGAAGGCTGAAACGGAGTCGTCGAACAACTCGGAGAACAGCGCCGAGAGCCAGGCGAAGAGTGAATCATGTGTGCCGGAAACGCAGCAGGTTGCTACCGGAAATGACGATAGTGGACAGGCACAGGCTCAGGTTACCACCTCCCAAGGTCAAGTTCATATTCAAGTACAAAGTGGCGACCAAACTTTGCAAGTTCAAGGTCAAGGAGAAAATGGAACACCGCAGAAAAAGTACAAGTGCGCTTTTTGCGTGAAAACctatatgtacctacataatcTAAAGAAGCATATGTTGTTACACACACAAGAACGCGCTAGAAATTCGGAACAAATAATCTTTCTCCAACAACAGCAGCAACAACCCCAACAACAGCAACAGACGCAACAAGTTCAACAACAGCAGgtgcaacaacaacaacacacTCAACAGTTGCAACAACAGCAACAGGTGCAAGTGCAACAACAGCAAGTTCAACAACAGGTCCAACAACATGTTCAGCAACATCACCAGCAGCAACAGTTGCAGCAACAGGTGTTGCAAGTTGGAAATGTGCAACAACTCGCAGTGCCGATTCATGCTCAACACGTGCAGCAAGGAATAACGGTTTCGGGTGTTCAGGGCCAACATCCTTATCCGGTGATCTCGTCAGTGCAGTCATTGCAACTTCAGCAAACACAACAGCAACAGCCGCAGCAACTACAAGTGCAAACGATACAAATACATCCGCAACATCAGCCAATACAAATTCATG
Protein Sequence
MATTAAIVNKLQTLNFNKICRACLETKKDMRPLFEQLTATMLMGISKVQVEVGDTLPSQLCLQCVHQISRCHAFKEMVERNDVALREHAKTLAEQAFKREREEKEKLINMNCTEPYMQYMEVPITTTNQILDGFFNTTPAQTPTPASELDSKEEFEEKTETTSNTPKEKDGLNSDEENYLQLVVFQATSTVSPGRHVCNLCHKEFKHPRWLKQHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPSKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYICSTCGKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHVCTECNKGFYEVSKLNAHMRVHTGERPYECQFCSRRFAQQSALIYHRRTHTGEKPYSCKLCSAKFTTSSARNNHMVTHTGNKRFVCPVCFKGCTSRTELRVHASKHTGEKLFACELCDQRFSSASYLAVHRRHHSGELKYQCLICGKGYIESSSYKKHMKTHDVKAETESSNNSENSAESQAKSESCVPETQQVATGNDDSGQAQAQVTTSQGQVHIQVQSGDQTLQVQGQGENGTPQKKYKCAFCVKTYMYLHNLKKHMLLHTQERARNSEQIIFLQQQQQQPQQQQQTQQVQQQQVQQQQHTQQLQQQQQVQVQQQQVQQQVQQHVQQHHQQQQLQQQVLQVGNVQQLAVPIHAQHVQQGITVSGVQGQHPYPVISSVQSLQLQQTQQQQPQQLQVQTIQIHPQHQPIQIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00822191;
90% Identity
iTF_00823267;
80% Identity
-