Hscr025991.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438987.1:5674453-5690827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6e-05 0.0028 19.1 6.8 1 23 196 218 196 218 0.98 2 13 2.5e-06 0.00027 22.2 0.2 3 23 232 252 231 252 0.98 3 13 7.1e-05 0.0076 17.7 2.0 2 23 261 282 261 282 0.98 4 13 0.0002 0.021 16.3 1.5 3 23 290 310 288 310 0.95 5 13 1.4e-06 0.00014 23.1 0.8 1 23 316 338 316 338 0.98 6 13 1.7e-05 0.0018 19.6 8.6 2 23 345 366 344 366 0.97 7 13 2.3e-05 0.0025 19.2 0.8 1 23 372 394 372 394 0.98 8 13 1.2e-05 0.0012 20.2 1.6 1 23 400 422 400 422 0.99 9 13 0.00042 0.045 15.3 1.2 1 23 428 450 428 450 0.98 10 13 0.00055 0.059 14.9 2.1 1 23 456 478 456 478 0.98 11 13 1.2e-05 0.0013 20.1 0.5 1 23 484 506 484 506 0.97 12 13 3.6e-06 0.00038 21.8 0.9 1 23 512 534 512 534 0.99 13 13 0.0014 0.15 13.6 3.7 1 23 613 635 613 635 0.98
Sequence Information
- Coding Sequence
- ATGGCTACTACTGCTGCTATTGTCAATAAACTTCAAACTTTGAACTTCACCAAAATATGTCGAGCTTGCTTGGAGACAAAAAAGGATATGAGACCTCTGTTTGAGCAATTAACTGCTACCATGCTGATGGGAATATCAAAAGTGCAGGTGGAAGTCGGCGATACCTTGCCGTCCCAGCTGTGTTTACAGTGTGTGCACCAAATATCCCGCTGTCACGCCTTCAAGGAGATGGTAGAAAGGAATGATGTCGCACTCCGTGAACACGCCAAGACTCTTGCCGAACAAGCCTTCAAAAGAGAAAGGGAAGAGAAAGAGAAACTGATAAATATGAATTGTGCGGAACCTTACATGCAGTACATGGAGGTGCCTATTACCACAACCAATCAAATACTCGACGGATTCTTCAATACCACTCCGGCTCAGACACCAACCCCAGCATCCGAACAGGACACCAAAGAAGAATTTGAAGAAAAGCTTGAATCTGCATCTAATACGCCAAAAGAGAAGGATGGTTTGAACTCTGATGAGGAGAACTATCTTCAATTGGTCGTATTTCAAGCGAGTTCGACGGTGTCCCCTGGCCGTCACGTATGCAACCTCTGTCACAAGGAGTTCAAACATCCAAGGTGGTTGAAACAGCATATGAGATCCCACACCAACTGGATAAAAGCGAATTGCAAGAAACCACCAATGTGCCCCATTTGTGAACGAACTTTTAAGGGTCCAGGGATGCTAAAAATGCACATGCGGACTCACGAACAACGCCCGCCCAAACAGCCAACGTGCTCAGTCTGCCAGCGCACCTTCCCCAGCAAAACTTTACTCTATCGGCATAGACAAACTCACTTCGAGCAGAAAACCCACCTGTGTAATGTGTGCGACAAGAGGTTCTATAGCGGCTACGCATTAAGGTCTCATATGGCAAGGCATCGTGGAGAGAGGCCTTACGTTTGCTCTAATTGCGGCAAAAGTTTCTACAACCCAACGGATTTGAAGGTACACTTCCGACTTCACACGGGTGAAAAACCACTAAAATGTACCGAATGCAATAAAACATTCCGGCGACATTCGACTTTATGCCAGCATATGAAGAAACACCGTGGAATACGGAACCATGTCTGCACAGTGTGCAACAAAGGATTCTATGAAGTGTCCAAGCTTAATGCTCATATGCGAGTGCACACTGGCGAACGTCCGTACGAATGTCAGTTCTGTTCCCGTCGTTTCGCCCAGCAGTCCGCCCTTATCTACCACCGGCGTACTCATACTGGGGAAAAGCCGTACAGCTGCAAGCTATGTTCAGCAAAGTTTACCACTTCCTCTGCGAGGAACAACCATATGGTCACGCATACTGGTAATAAAAGGTTCGTGTGCCCGGTGTGCTTCAAGGGCTGCACGTCCCGCACGGAGCTGCGCGTGCACACGAGCAAGCACACGGGCGAGAAGCTGTTCGCGTGCGAGCAGTGCGACCAGCGCTTCAGCTCCGCCTCGTACCTCGCCGTGCACCGCCGCTACCACACCGGCGAGATGAAGTACCAGTGCCTCGTCTGCGGGAAAGGTTATATAGAATCCAGTTCATATAAAAAGCATATGAAGACACACAACGTCAAGCCTGAAACGGAGTCGTCGAATAACTCGGAGAATAGCGCCGAGAGCCAGCCGAAGGGTGACTCTTGTCTAACGGAAACACAGCAGGCTGTGACCGGAAATGATGATAGTGAACAGGCACAGGCTCAAGTTACCACAGCCCAAGGTCAAGTTCATATACAAGTACAAGGTGGCGACCAAGCTTTGCAAGGTCAAGGTCAAGGAGAAAATGGAACACCACAGAAAAAGTACAAGTGCGCTTTTTGCGTGAAAACctatatgtacctacataatCTGAAGAAGCATATGCTGCTACATACACAAGAACGGGCTCGGAATTCGGAACAAATAATCTTTCTCCAACAACAACAGCAACAGCCCCAACAACAGCAACAGGCGCAACAAGCTCAACAACAGCAGGTGCAACAACAGCAACAACACACGCAACAGTTGCAACAGGTACAAGTGCAACAACAAGTTCAACAGCAACAGGTACAGCAACAAGTACAGCAACATCATCAGCAGCAGCAGTTGCAGCAACAGGTGTTGCAAGTGGGTAATGTGCAACAACTTGCTGTACCGATACACGCACAACACGTGCAGCAAGGGATAACGGTTTCGGGTGTTCAGGGCCAACATCCTTATCCGGTGATCTCGTCAGTGCAATCACTGCAACTACAGCAAACGCAACAGCAACAGCCGCAGCAACTTCAAGTGCAAACAATACAAATACACCCGCAACACCAGCCGATACAAATCCACGCCGTGGGGGTTCAGCAGGTGCAACAACAACAACTACACGTGGCTACTTCCTCTTGTCAGACAATGTTACCTAACATATTGCAGCTCCAACCAGGTACAGTAGCAGTGTCGGGACTGAGCCAACCGGAGTTGGGCGGAGTTACGCACCGCATCATTCTACAGCCGCAGCCTTCCGCTACTCACCCTGCCGTTTACACCATACACCACTGA
- Protein Sequence
- MATTAAIVNKLQTLNFTKICRACLETKKDMRPLFEQLTATMLMGISKVQVEVGDTLPSQLCLQCVHQISRCHAFKEMVERNDVALREHAKTLAEQAFKREREEKEKLINMNCAEPYMQYMEVPITTTNQILDGFFNTTPAQTPTPASEQDTKEEFEEKLESASNTPKEKDGLNSDEENYLQLVVFQASSTVSPGRHVCNLCHKEFKHPRWLKQHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPSKTLLYRHRQTHFEQKTHLCNVCDKRFYSGYALRSHMARHRGERPYVCSNCGKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPYECQFCSRRFAQQSALIYHRRTHTGEKPYSCKLCSAKFTTSSARNNHMVTHTGNKRFVCPVCFKGCTSRTELRVHTSKHTGEKLFACEQCDQRFSSASYLAVHRRYHTGEMKYQCLVCGKGYIESSSYKKHMKTHNVKPETESSNNSENSAESQPKGDSCLTETQQAVTGNDDSEQAQAQVTTAQGQVHIQVQGGDQALQGQGQGENGTPQKKYKCAFCVKTYMYLHNLKKHMLLHTQERARNSEQIIFLQQQQQQPQQQQQAQQAQQQQVQQQQQHTQQLQQVQVQQQVQQQQVQQQVQQHHQQQQLQQQVLQVGNVQQLAVPIHAQHVQQGITVSGVQGQHPYPVISSVQSLQLQQTQQQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPGTVAVSGLSQPELGGVTHRIILQPQPSATHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822191;
- 90% Identity
- iTF_00824061;
- 80% Identity
- -