Hpro027289.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990146.1:3404082-3426480[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7e-05 0.0028 19.1 6.8 1 23 194 216 194 216 0.98 2 13 2.6e-06 0.00027 22.3 0.2 3 23 230 250 229 250 0.98 3 13 0.00014 0.014 16.9 1.5 2 23 259 280 259 280 0.98 4 13 0.00027 0.028 16.0 1.6 3 23 288 308 286 308 0.95 5 13 1.7e-06 0.00017 22.9 0.9 1 23 314 336 314 336 0.98 6 13 1.8e-05 0.0018 19.7 8.6 2 23 343 364 342 364 0.97 7 13 1.8e-05 0.0019 19.7 0.7 1 23 370 392 370 392 0.98 8 13 1.2e-05 0.0012 20.2 1.6 1 23 398 420 398 420 0.99 9 13 0.0011 0.11 14.1 3.2 1 23 426 448 426 448 0.98 10 13 0.00099 0.1 14.2 1.4 1 23 454 476 454 476 0.97 11 13 2.6e-05 0.0027 19.2 1.2 1 23 482 504 482 504 0.98 12 13 1.1e-06 0.00012 23.5 1.1 1 23 510 532 510 532 0.99 13 13 4.7e-05 0.0048 18.4 2.6 1 23 608 630 608 630 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCCTCAGCTCTTGCTAATAAAGTTCAAACATTGAAATTCGACAAGATATGTCGAGCATGTTTGGAAATAAAAAAGGACATGAGACCCCTATTCGAGCAGCTAACTGCAACAATGTTGATGGGCATAACAAAAGTGCAGGTGGAGGTTGGTGACGGCTTGCCAGCGCAGCTATGCCTGCAGTGTGTGCACCAGATCTCGCGGTGCCACGCCTTCAAAGACATGGCTGAGAGGAATAACGCCGCGCTCAGAGAACATGCCAAGCTACTCGCTGAACAGGCGTATAAGAGGGAGAGGGAAGAGAAAGAAAAGTTGTTGAACATGAACATAGGCTCTGAGCCGTTCATGCAGTACATGGAAGTACCCATGAACAACCCCGCACAGATCCTGGAAGGCTTCTTCAACGCCACGCCCGACACCCCCGCGCCTGCGCCCGAGCCCGAGCCTAAGGAAGAGTTCGAACCAAAGCTGGAATCTGACAATCCTGTCAAGGATAAAGACGGTCTAAACTCAGACGAGGAGAACTACCTTCAGCTGGTAGTGTTCCAAGCTACATCGACGGTGTCGCCCGGCCGCCACGTCTGCAACCTATGCCATAAGGAGTTCAAGCACCCGAGGTGGTTGAAACAGCATATGCGCTCCCATACCAACTGGATTAGGGCCAATTGTAAGAAGCCGCCCATGTGTCCCATTTGTGAGAGAACTTTTAAGGGCCCAGGAATGCTAAAAATGCACATGCGTACCCACGAGCAACGTCCTCCAAAACAGCCGACGTGTTCAGTATGCCAGCGCATCTTCCCGACTAAGACGCTACTGTACCGGCATAGACAGACCCACTTCGAGCAGAAGACGCACCTCTGCACGGTGTGCGACAAGCGGTTCTATAGCGGGTACGCCCTGAGGTCCCATATGGCAAGGCACCGTGGGGAGCGGCCCTATGTGTGCTCCACGTGTGGGAAGAGCTTCTATAACCCTACGGACTTGAAGGTCCACTTCCGCCTGCACACTGGAGAGAAGCCGCTCAAATGTACGGAATGCAACAAAACGTTCCGTCGTCACTCGACGCTGTGCCAGCACATGAAGAAGCACCGCGGCATTCGCAACCACGTGTGCAACGTGTGCAACAAAGGGTTCTACGAGGTGTCCAAGTTGAATGCGCATATGAGAGTGCATACTGGTGAGCGTCCGTACGAGTGTCAGTTCTGCTCGCGGCGCTTCGCGCAGCAGTCCGCCCTGATCTACCACCGCCGCACGCACACCGGCGAGAAGCCTTACTGCTGCAAGCTGTGCTCGGCGAGGTTCACCACCTCGTCCGCCAGGAACAACCACATGATCACTCATACCGGGAATAAGAGGTTCGTGTGCCCGGTGTGCTTCAAAGGCTGCACGTCGCGCACGGAGCTGCGCGTGCACGCCACCAAGCACTCGGGCGAGAAGCTGTTCGAGTGCTCCACGTGCCAGCAGCGCTTCAGCTCGGCGTCCTACCTCGCCGTGCACCGCCGCTACCACGCCGGCGAGCTCAAGTACCAGTGCTCCGTCTGCGGGAAAGGTTACATAGAATCCAGTTCTTACAAGAAGCACATGAAAACGCACGAGCCGAAGAGTGACCCGGAGTCCACGGACAACAGCGGAGACGCGTCCAACAAAGCGGATGCCTGCCTCAACGAGCAGCAGCAACAGAATGCCGGCAGTGATAATATCGTGCAAGTCCAAGTTCAAAATCAAATGCAGTCGCAACCTCAAGTGCAGATCCAGGTGCAATCGGGCGAGCAGCTCCAAGGCCAGGAGCAAGCTGAGTCCGGGGGCAATCAGAAACGGTACAAGTGCGGACTCTGCCCCAAAACGTACATGTATCTGCACAACCTCAAGAAACATATGCTTTTGCACGCACAGGAACGCGCCCGCAACCCAGAACAAATAATATTCgtgcagcagcagcagcagcagcaacaACAATCTCAACAGCAGCAACAAGCTCAGCAGCAGGTGCAGCAACAGCACACGCAGCAGATGCAGCAACAGCAGCAGGTGCAAGTGCAGCAGCAAGTACAACAACAACAGcaAGTGCAGCAAGTGCAGCACACCTTACATTCCCCGGCGATGCTGTCGGTGGGGGGCGTGGGAGGGGTGCAGCAGCTGGCCGTGCCTTTGCACCAGCACGTGCAGCAAGGCATCACTGTGTCTGGAGTTCAGGGCCAGCACCCGTACCCCGTGATATCGTCGGTGCAATCGCTGCAATTGCAGCAAACACAACAGGTTAACACGCAACAGCCGCAGCAACTCCAAGTACAGACGATACAGATCCACCCGCAACATCAGCCCATACAGATTCATGTGAGTGATATGCATTACATGCTGATTGAACGTACGCCCGgccaaaatattacaaatgaactaaaacatataatattattaaaaccgacgtga
- Protein Sequence
- MAASALANKVQTLKFDKICRACLEIKKDMRPLFEQLTATMLMGITKVQVEVGDGLPAQLCLQCVHQISRCHAFKDMAERNNAALREHAKLLAEQAYKREREEKEKLLNMNIGSEPFMQYMEVPMNNPAQILEGFFNATPDTPAPAPEPEPKEEFEPKLESDNPVKDKDGLNSDEENYLQLVVFQATSTVSPGRHVCNLCHKEFKHPRWLKQHMRSHTNWIRANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRIFPTKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYVCSTCGKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKGFYEVSKLNAHMRVHTGERPYECQFCSRRFAQQSALIYHRRTHTGEKPYCCKLCSARFTTSSARNNHMITHTGNKRFVCPVCFKGCTSRTELRVHATKHSGEKLFECSTCQQRFSSASYLAVHRRYHAGELKYQCSVCGKGYIESSSYKKHMKTHEPKSDPESTDNSGDASNKADACLNEQQQQNAGSDNIVQVQVQNQMQSQPQVQIQVQSGEQLQGQEQAESGGNQKRYKCGLCPKTYMYLHNLKKHMLLHAQERARNPEQIIFVQQQQQQQQQSQQQQQAQQQVQQQHTQQMQQQQQVQVQQQVQQQQQVQQVQHTLHSPAMLSVGGVGGVQQLAVPLHQHVQQGITVSGVQGQHPYPVISSVQSLQLQQTQQVNTQQPQQLQVQTIQIHPQHQPIQIHVSDMHYMLIERTPGQNITNELKHIILLKPT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824061; iTF_00823267;
- 90% Identity
- -
- 80% Identity
- -