Hscr032917.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438995.1:7185872-7188214[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 4.3e+03 -1.0 0.1 27 49 10 32 7 35 0.82 2 10 0.042 1.6e+03 0.3 0.0 22 48 63 90 47 95 0.78 3 10 0.00098 37 5.6 0.1 27 48 100 121 96 127 0.88 4 10 2e-06 0.076 14.2 0.1 21 48 154 182 140 187 0.88 5 10 0.00029 11 7.3 0.3 26 48 189 211 184 215 0.90 6 10 0.0049 1.9e+02 3.3 0.2 21 48 215 242 210 246 0.80 7 10 0.35 1.3e+04 -2.6 0.1 26 48 256 278 251 281 0.79 8 10 0.59 2.2e+04 -3.3 0.0 25 31 334 340 332 342 0.86 9 10 0.00054 21 6.4 0.0 26 49 410 433 403 438 0.90 10 10 5.7e-05 2.2 9.5 0.1 26 49 468 491 462 494 0.88
Sequence Information
- Coding Sequence
- ATGTATCACAATCAATTGGATTTTGTCTGCGATTACTGTTCCAGAACATTCACAAGAAAATATAACCTACAAACGCATATTGAGAACTGTCACATAAATTCAACTTCCCACTGCGATATTTGTGAACAAAGTTTCGGTAGTCCAGCAGGGTTACAACTCCATCTATCAAGAGGACACAACAACTATGCCCAACCGTTTCCAGAATGTGATATATGTGGAAGAATTTTTAcgagaaaacaaaatatcacGTCTCACATGATCACCGTGCATTTACAAGGATTAGGTGATGATATAAGATGTAAATTGTGCGATAAAAACTTCACTACAGAAAGAAATTTGAAGAGGCACATGAACCAACAACATAATCCCTACGCGGAATACCCTACGTGTTATTATTGTAACAAGACCTTCAAAGGGAAACACTCACTTATTTCTCATATCCACACAATTCATAATATCAGTGAAAAAGATGCGATAAAATGTCACTTGTGTGAGAAAGTATACACAAATacgagaaatttaaaaagacataTTGAAATGTTTCATGGCGAACGAGGCGAATTCAAATGTGATATATGCCCCAAAGTGTACACCTCAAATCAGAGTTTGAGAAGGCATCTCCGCACAACACACAGCACAGACAGTAACGAACAGTTTGCGTGCAACTTGTGCAGCAAAGTTATCATCGGAAGGGAAAACTATGAAAGCCACTTACAATACATACATCACTACGAAAACGAATCTAAAATTAgtgtaaatgaaattatatgCGAAACGTGTCACCAGACTTTCGAAGAAGAATCTCTATTACGACAACACATAAAGGAAAATCACCCGTTTAAAGTTTTTTACAAATACTGTAGGAATGTTTTATTAAGACAATACGGGTCTGAGTTTGTTAATAATGTGTACAATTGTGAATATTGTCAGCACACATTTCCTAGCGTGTACGAACTAAAAGATCATATGCGAATAAACCACGACACTGAATACTCTCTATCCACGTGTAACGTATGCTTTAacaaatattactgtaaagAAACGATGAATGCCCACAAAAAAGTGTGTCTACCCCCACCAAACGTGAATTCCTGCAGTCATTGCGACAAATTATTCACCGATATCTCTAGTTTAGAATTCCATACGAGAATATTTCACCCTCAAGCGCAGATTGCCGACTCCAATATATCTTCAACGAATATAGAAGACGATTTGCCAACGTCATTCAAATGCCCACATTGTAATCGGATGTATTATAGCGATCGATCGCTAAAACATCACATAAAGCTAAAACACACATCCGATGAACAAGTAGGCTGTGAGTTTTGTGGTAAAATTTGCAGCAATAAGTACTATTTAGCTTCACACATCAAAATAGTTCACAATAACGATTCTTGGTCTCGCTGTGAGTACTGCGATAAACAGTTCAAATCTAAAAGAAACATCAGGAGACACATTGAATACACACATCTAGGTATGCAAAGtgATGCGTGCAAGACCAAGGCAATTTTAAGCGAGCTTTGCACCACTGAAATGAGTGAGGAAGAGTCTGAGTTTTCTGGTTTCGGTTCTTTGCATCAGCTCCCGGAGAGCACAACGAgtgaattcaattttaaaatagaacctTTGATGGATGAAGATGATATTAAAAGGGAACCTTTGTCACCTTAA
- Protein Sequence
- MYHNQLDFVCDYCSRTFTRKYNLQTHIENCHINSTSHCDICEQSFGSPAGLQLHLSRGHNNYAQPFPECDICGRIFTRKQNITSHMITVHLQGLGDDIRCKLCDKNFTTERNLKRHMNQQHNPYAEYPTCYYCNKTFKGKHSLISHIHTIHNISEKDAIKCHLCEKVYTNTRNLKRHIEMFHGERGEFKCDICPKVYTSNQSLRRHLRTTHSTDSNEQFACNLCSKVIIGRENYESHLQYIHHYENESKISVNEIICETCHQTFEEESLLRQHIKENHPFKVFYKYCRNVLLRQYGSEFVNNVYNCEYCQHTFPSVYELKDHMRINHDTEYSLSTCNVCFNKYYCKETMNAHKKVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIEDDLPTSFKCPHCNRMYYSDRSLKHHIKLKHTSDEQVGCEFCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQSDACKTKAILSELCTTEMSEEESEFSGFGSLHQLPESTTSEFNFKIEPLMDEDDIKREPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823270; iTF_00823232;
- 90% Identity
- iTF_00823270; iTF_00823232;
- 80% Identity
- iTF_00823270; iTF_00823232;