Hcor085498.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- che-1
- Assembly
- GCA_030762935.1
- Location
- CM060899.1:80135216-80140836[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0055 1.1e+02 5.7 0.1 22 45 62 85 53 92 0.84 2 11 0.0015 31 7.5 0.5 21 50 89 118 86 123 0.88 3 11 0.023 4.8e+02 3.7 0.4 21 48 118 145 113 152 0.81 4 11 0.0036 74 6.3 0.3 22 50 148 176 139 179 0.82 5 11 0.054 1.1e+03 2.5 0.4 21 44 176 199 170 204 0.87 6 11 0.00027 5.6 9.9 0.4 21 48 205 232 199 235 0.90 7 11 0.053 1.1e+03 2.5 0.0 22 45 235 258 233 263 0.88 8 11 0.0015 30 7.5 0.1 20 43 290 313 281 319 0.88 9 11 0.054 1.1e+03 2.5 0.0 22 45 320 343 316 348 0.86 10 11 0.0086 1.8e+02 5.1 0.9 19 49 346 376 339 380 0.81 11 11 0.0036 75 6.3 0.1 22 48 378 404 373 410 0.87
Sequence Information
- Coding Sequence
- ATGGTGCCCTTTTCATTGACTCTCCGGGTTATGGAGAAGACGGCAGACCTGAAACCAGACAATCCACAAGGAAACAAATCAGCGCGAGAGTGGGGTGACATCTGGCAAGAGTTCTTGGCACCGAGCAACAACACTCCATTGCCAGCAAGTGATGCAGGCTCACAAACTCCAAAGCCTACGCTGGATAGACCTTTCAGGTGTGATGTATGTGGAAAAGCATTCACTCAGGCTCGACACCTGACACGCCACAGCATGGTGCACACGGGGGAGAAGCCCTACACTTGCAAGCAGTGCTTGAAGAGGTTCTCGCAACAGAGCGACCTCACTCGCCACATCCGTCGCATCCACACGGCAGAGAAACCCTACGTCTGCAGCATCTGCGTGAAGGGGTTCTCTCAGAGAGGTGACTTTATCAGACACACCCAGCGCGTTCATGCAGAAAACAAGCCACACGTGTGCTCCATCTGCAGGAAGAACTTCGCCCAGGATGGTGACCTCAAGAGACACAAGATGCGCGTACACACTGCTGAGAAGCcgtatctgtgccaagtttgttTACATAGGTTTAGCCAACATGGGGATCTGGTGCGACACACACGCCGTGTACACACCGGGGAGCGTCCCTTTTCATGTACTATATGTGTCAAGAGTTTTGTGCAGCGAGCTGATCTTAATCGTCACGTTCGTCTCATCCACACTGGGGAACGTCCCTTCGTGTGTGAGCTGTGTGTGAAGGCATTCGTCCAGCTGGGCGACCTCACAAGACATGTGAGACGAGTGCATGGGGGGGAAAGCAAGCAGTATCACAACTCACCCTGCGTACTGAACCCTAGTGCGTGTGACCTCAGCAGACGCACCGAGAGCGTTGATGCTGAGCGACCATACGTGTGCGACGTGTGTGGCAAAGCATTCCTGCAGGCTCGCCACCTGTCCCGACACAACTTCACGCACACTGGTCAGCGACCGTTCTCCTGCGCCGTATGTCTCAAGGGGTTTGTTCAGGCGGGCGACCTCACGAGACACACACGCAGAGTCCACACAAAGGAGAAACCGTTCTCGTGCCAGGTATGTTTAAAGAGCTTCGTCCAAAGAACGGAACTCACCAGACACACAATACGCGAGCACACCAACAAGAAACCCTTCCCTTGTAAAATCTGTCTGAAAACTTTTGTCCAGGCCACGGATCTGGCGCGTCACGTGAAGCGCATGCACACTGGTCAAGAGAAACCTTTCTGTGATATCTGTACGCAGAACTATACCACAGTTGGAGAAGCCACCAAGGACGAGGCACACATTATCACAGCCCAGGCGTACGTCACCATGGCTCAGGATATCGCACTCACAGGTGGCACTCCTCCTTGCGTATGTGTGCAGGAAACAAAACTTGCAAATGGGGAGAAAACAAGTTGCGAGCTTCAAAATGTCAACAAAGTAATCTGTGCTTCTGATGTACAACATTAA
- Protein Sequence
- MVPFSLTLRVMEKTADLKPDNPQGNKSAREWGDIWQEFLAPSNNTPLPASDAGSQTPKPTLDRPFRCDVCGKAFTQARHLTRHSMVHTGEKPYTCKQCLKRFSQQSDLTRHIRRIHTAEKPYVCSICVKGFSQRGDFIRHTQRVHAENKPHVCSICRKNFAQDGDLKRHKMRVHTAEKPYLCQVCLHRFSQHGDLVRHTRRVHTGERPFSCTICVKSFVQRADLNRHVRLIHTGERPFVCELCVKAFVQLGDLTRHVRRVHGGESKQYHNSPCVLNPSACDLSRRTESVDAERPYVCDVCGKAFLQARHLSRHNFTHTGQRPFSCAVCLKGFVQAGDLTRHTRRVHTKEKPFSCQVCLKSFVQRTELTRHTIREHTNKKPFPCKICLKTFVQATDLARHVKRMHTGQEKPFCDICTQNYTTVGEATKDEAHIITAQAYVTMAQDIALTGGTPPCVCVQETKLANGEKTSCELQNVNKVICASDVQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00435006;
- 90% Identity
- iTF_00821171;
- 80% Identity
- iTF_00821171;