Basic Information

Insect: Hymenopus coronatus
Gene Symbol: che-1
Assembly: GCA_030762935.1
Location: CM060899.1:80135216-80140836[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.4e-07 0.0001 25.2 1.4 1 23 65 87 65 87 0.97

2 11 1.1e-07 4.5e-05 26.3 2.4 1 23 93 116 93 116 0.98

3 11 1.4e-05 0.006 19.6 0.4 1 23 122 145 122 145 0.97

4 11 9.3e-05 0.04 17.0 1.4 1 23 151 174 151 174 0.96

5 11 0.002 0.84 12.9 3.3 1 23 180 203 180 203 0.95

6 11 1.9e-06 0.0008 22.4 0.3 1 23 209 232 209 232 0.96

7 11 1.1e-05 0.0048 19.9 0.1 1 23 238 261 238 261 0.97

8 11 0.00027 0.12 15.6 1.3 1 23 295 317 295 317 0.97

9 11 3.2e-05 0.014 18.5 0.1 1 23 323 346 323 346 0.97

10 11 2.5e-05 0.011 18.8 1.0 1 23 352 375 352 375 0.96

11 11 7.4e-06 0.0032 20.5 0.3 1 23 381 404 381 404 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.4e-07	0.0001	25.2	1.4	1	23	65	87	65	87	0.97
2	11	1.1e-07	4.5e-05	26.3	2.4	1	23	93	116	93	116	0.98
3	11	1.4e-05	0.006	19.6	0.4	1	23	122	145	122	145	0.97
4	11	9.3e-05	0.04	17.0	1.4	1	23	151	174	151	174	0.96
5	11	0.002	0.84	12.9	3.3	1	23	180	203	180	203	0.95
6	11	1.9e-06	0.0008	22.4	0.3	1	23	209	232	209	232	0.96
7	11	1.1e-05	0.0048	19.9	0.1	1	23	238	261	238	261	0.97
8	11	0.00027	0.12	15.6	1.3	1	23	295	317	295	317	0.97
9	11	3.2e-05	0.014	18.5	0.1	1	23	323	346	323	346	0.97
10	11	2.5e-05	0.011	18.8	1.0	1	23	352	375	352	375	0.96
11	11	7.4e-06	0.0032	20.5	0.3	1	23	381	404	381	404	0.97

Sequence Information

Coding Sequence: ATGGTGCCCTTTTCATTGACTCTCCGGGTTATGGAGAAGACGGCAGACCTGAAACCAGACAATCCACAAGGAAACAAATCAGCGCGAGAGTGGGGTGACATCTGGCAAGAGTTCTTGGCACCGAGCAACAACACTCCATTGCCAGCAAGTGATGCAGGCTCACAAACTCCAAAGCCTACGCTGGATAGACCTTTCAGGTGTGATGTATGTGGAAAAGCATTCACTCAGGCTCGACACCTGACACGCCACAGCATGGTGCACACGGGGGAGAAGCCCTACACTTGCAAGCAGTGCTTGAAGAGGTTCTCGCAACAGAGCGACCTCACTCGCCACATCCGTCGCATCCACACGGCAGAGAAACCCTACGTCTGCAGCATCTGCGTGAAGGGGTTCTCTCAGAGAGGTGACTTTATCAGACACACCCAGCGCGTTCATGCAGAAAACAAGCCACACGTGTGCTCCATCTGCAGGAAGAACTTCGCCCAGGATGGTGACCTCAAGAGACACAAGATGCGCGTACACACTGCTGAGAAGCcgtatctgtgccaagtttgttTACATAGGTTTAGCCAACATGGGGATCTGGTGCGACACACACGCCGTGTACACACCGGGGAGCGTCCCTTTTCATGTACTATATGTGTCAAGAGTTTTGTGCAGCGAGCTGATCTTAATCGTCACGTTCGTCTCATCCACACTGGGGAACGTCCCTTCGTGTGTGAGCTGTGTGTGAAGGCATTCGTCCAGCTGGGCGACCTCACAAGACATGTGAGACGAGTGCATGGGGGGGAAAGCAAGCAGTATCACAACTCACCCTGCGTACTGAACCCTAGTGCGTGTGACCTCAGCAGACGCACCGAGAGCGTTGATGCTGAGCGACCATACGTGTGCGACGTGTGTGGCAAAGCATTCCTGCAGGCTCGCCACCTGTCCCGACACAACTTCACGCACACTGGTCAGCGACCGTTCTCCTGCGCCGTATGTCTCAAGGGGTTTGTTCAGGCGGGCGACCTCACGAGACACACACGCAGAGTCCACACAAAGGAGAAACCGTTCTCGTGCCAGGTATGTTTAAAGAGCTTCGTCCAAAGAACGGAACTCACCAGACACACAATACGCGAGCACACCAACAAGAAACCCTTCCCTTGTAAAATCTGTCTGAAAACTTTTGTCCAGGCCACGGATCTGGCGCGTCACGTGAAGCGCATGCACACTGGTCAAGAGAAACCTTTCTGTGATATCTGTACGCAGAACTATACCACAGTTGGAGAAGCCACCAAGGACGAGGCACACATTATCACAGCCCAGGCGTACGTCACCATGGCTCAGGATATCGCACTCACAGGTGGCACTCCTCCTTGCGTATGTGTGCAGGAAACAAAACTTGCAAATGGGGAGAAAACAAGTTGCGAGCTTCAAAATGTCAACAAAGTAATCTGTGCTTCTGATGTACAACATTAA
Protein Sequence: MVPFSLTLRVMEKTADLKPDNPQGNKSAREWGDIWQEFLAPSNNTPLPASDAGSQTPKPTLDRPFRCDVCGKAFTQARHLTRHSMVHTGEKPYTCKQCLKRFSQQSDLTRHIRRIHTAEKPYVCSICVKGFSQRGDFIRHTQRVHAENKPHVCSICRKNFAQDGDLKRHKMRVHTAEKPYLCQVCLHRFSQHGDLVRHTRRVHTGERPFSCTICVKSFVQRADLNRHVRLIHTGERPFVCELCVKAFVQLGDLTRHVRRVHGGESKQYHNSPCVLNPSACDLSRRTESVDAERPYVCDVCGKAFLQARHLSRHNFTHTGQRPFSCAVCLKGFVQAGDLTRHTRRVHTKEKPFSCQVCLKSFVQRTELTRHTIREHTNKKPFPCKICLKTFVQATDLARHVKRMHTGQEKPFCDICTQNYTTVGEATKDEAHIITAQAYVTMAQDIALTGGTPPCVCVQETKLANGEKTSCELQNVNKVICASDVQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00435006;
90% Identity: iTF_00821451;
80% Identity: iTF_00821451;