Basic Information

Gene Symbol
stc
Assembly
None
Location
HLhylVes1:7152767-7168106[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 2.4e+04 -4.3 1.6 15 19 454 458 453 458 0.81
2 13 0.047 5.6e+02 1.1 1.4 2 10 486 494 486 494 0.92
3 13 3.6e-05 0.42 11.1 18.1 4 19 502 517 500 517 0.93
4 13 1.4e-06 0.017 15.5 12.2 1 19 553 571 553 571 0.93
5 13 4.2e-05 0.5 10.8 16.1 1 19 612 630 612 630 0.99
6 13 2.4e-05 0.29 11.6 10.5 1 19 671 693 671 693 0.86
7 13 2 2.4e+04 -4.7 1.7 6 10 723 727 723 727 0.95
8 13 0.00073 8.7 6.9 7.4 1 11 733 743 733 744 0.95
9 13 0.14 1.6e+03 -0.4 0.5 4 10 748 754 747 756 0.92
10 13 4.9e-07 0.0059 17.0 14.2 1 19 760 778 750 778 0.87
11 13 0.00091 11 6.6 11.0 9 18 824 833 818 834 0.91
12 13 1.7e-07 0.002 18.5 14.2 1 17 870 888 870 894 0.83
13 13 0.00015 1.8 9.0 5.5 1 13 900 911 900 912 0.95

Sequence Information

Coding Sequence
ATGTCACAGTGGAATAGCACATACGCTTACAACGGCCAGTATCAAGCTGGCAATGCGTGGAATGGTGATGTGAATGGTCAATATGTTAATCAACCATATTACCCCAATAGACCAGACTCCAGTGGACAGTATGTTAGCTTCAATGAATTCTTAACCCAAATGCAAACTAACAATACTGTGCCCAACAATGCTCAGCATTACACCAATGTACCTTATGAAAATTATGCGCCAGCTCAGTACAATTATCAAAACATGCCCTCCTCATCGCAAGATCCACACTTAGAAAGTTTCAACTATAACACAAGCACTCCAAACATGCCCAACAATGTGGATCCCTCATACCATGTCAATGTACAAAGTCAGTACAATGTAAATCCCACATTCACAAGTGATTTGATTCTTAAATCTAATCTTACACCAACAGCGACTGAGTTTGTGCCAAAAAGTATGTTAAAAATGTCATCAAGTAAACAAAATGTAACTGATGGGCCCAGCTCCAGCAACAGTATACCAGAACATGTAAACAATCTAGGTAGCTCATCTGACACCAACTGGAGGGAAAGACCACAAACCTCTCATAGAAATGGTGAACAGAATGGCAGAGATACAGGCAATAGAACATCTAGAAACATTCGAAACAATGATAATTTAACTCGGCACAGAGAGTCAAATCATAGTGACAATAAGAGTAATGAATTGCCTCAAGAAAACTCTAGAAGTAATGATTTCAGGAGCAGAAACCATGACACTAACAACCGTAATTATGAAAATGCCCGTAACTATGACTTGGGTAACCACAGTCAAGATTCAAATTATCAAAATCCTGATAACAATAGGAGTCATAACTCAAATGCGCGTAATGATAAGAAGGCACAATCAAAAACTAATGGCAAAGCAAGAGCCAAAGATTCAGATGCACGCACATTCTATAACAGTTCTGTGCCTAAAGATAGTCAAGATGTAAGAAATAATAGAAATGAGGGTTCTAATAGACAAAAAAATTGGGCAGGCTCACAACGAATACGGGGTGTAGACAGACACAACCCTGATGATGAACAGTATGCAAATACTTATCTTCATCCAAGAGAAGACAAGGTTGACAGGGTAAAAGACAGGCCAGAGAACATTTCTAGTCCAATGAAGTTTAGAAATAAAACTATAGATCAAGCGCACAAAGAAATGACCCAGAGAGAAAGACTCTCAGAACAACTAGACAATGGCACATTAGAATGTTTGGTATGTTGTGAACGAGTGAAACAAATTGACCCAGTGTGGTGGTGTGCGAATTGTTACCATGTACTGCATCTGAAGTGTATCAAGAAATGGGCCACAAGCAGTCTTGTGGAGGGTAAGTGGCGTTGTCCGGCATGTCAGAACACGAACGACGCGATCCCCAGCGAGTACCGCTGCATGTGCGGCGCCGTGCGCGCGCCCGAGTACCACCGCGGCATGAGCGGCGCGCACACGTGCGGCAAGGCGTGCAAGCGGCCGCGCTCGTGCCCGCACCCCTGCACGCTGCTGTGCCATCCTGGACCCTGTCCGCCCTGCCAGGCCACTGTCAACAAGCAATGCGGTTGCGGTGCGGAGACGCGGTCGATCCTATGCAGTAGCAAGTTGCCGCAGGTGTGCGGGCGCGTGTGCCAGCGCACACTGCTCTGTACGGCGCACAAATGTACCAAGGAGTGTCACGAAGGACCCTGCGATGTTTGCACGGAGACCATCACCCAAACATGCCTGTGTCCGGCGCGGCGGCAGCGCACTGTATCATGCTCGGCGGCGACGGCGGGACAGGATTGGTTCCTGTgcggcggcgtgtgcgcgcgcgtgctggcgtgcggcgcgcacgtgtgtcgccagcgcTGCCACGAGCCGCCCTGCCAGCCCTGCCCGCTGCTGCCGGAACTAGTGCACTCCTGCCCCTGCGGCAAAATGAAGGTACCAAAGGACCAACGAAAATCGTGCACAGATCCCGTTCCTCTATGTGGCAACATTTGCGCTAAACCATTGCAGTGTGGTCCCGCCGGGGACAAACACTTCTGCAAGAGCAAATGCCATCAAGGTGATTGCAGCGTATGCCAGGATAAGACGGTTGTGCAATGTCGGTGTGGCCACGCAAGCCGCGAGATACCGTGCGAGTTACTGCAAGACTTGTCCGACAATGTCCTGTGCCAGAGGAAATGCAACAAGAAGCTATCGTGCGGTCGTCACAAGTGCAGGTCAGTGTGTTGCGTGTCGACGACGCACCGGTGCGGCGTGGTGTGCGGGCGCGCGCTGTCGTGCCAGCAGCACCGCTGCGAGGAGTTCTGCCACACCGGCCGCTGCGCGCCGTGCCCGCGCCTCAACTTCGACGAGgtgcggtgcgagtgcggcgcggaggtgctgctgccgccggtgccgtgtggagcgCGGCCGCCGCCCTGCGCCGCGCCGTGTCGCCGCGTGCGCGCCTGCAACCACCCGCCGCACCACTCCTGCCACTCCGGGGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCATGGCAACCACGAGGAGCGTAAAACGATTCCTTGTTCTCAAGAAGAGTTTTCGTGTGGCCTACCTTGCGGGAAACCGCTGCCTTGCGGCAAACACAACTGCATCAAAACCTGTCATAAAGGGCCTTGCGACACTGGAAAATGCACGCAGCCATGCACGGAGAAGCGCGCTGGCTGCGGACACCCGTGCGCGGCGCCGTGCCACGTGGGCGCGGCGGAGGGCAGCGCGGCGGCCGCGTGTCCCAGCGCCGCGCCGTGCCGCCGCCCCGTGCGCGCCACCTGCGCGTGCGGCCGCCGCGAGCAGGAGCGCGCCTGCTGCGACAACACTAGAGACTACGACAGGATGGTGAGTGCGCTCGCCGCGACCAAAATTCAGGATGGTGGTTCCGTCGACTTGGCTGACGTGCAACGGCCAGCCAATGTCCTTAAAACTCTGGAGtgcgaggaggagtgtcgcgcggaggctcgcgcgcggcggctggcgctggcgctgcagctgcgcaacccggacgtgtcgagcaagctggcgccgcgctacagcgagcacgtgcgcgccaccgcgcagcgcgagcccgccttcgcgctgcacgtgcacgacaaactcaccgaactcgtgcagctcgccaagaagTCGAAACAGAAGACGCGTTCTCACTCGTTCCCGTCGATGAACTGGCAAAAGCGTCAGTTTATCCACGAGATGTGCGAGCACTTCGGCTGCGAGAGCGTGGCCTACGACGCAGAGCCGAACCGCAACGTCGTCGCCACCGCCGACCGGGAGAAGTCGTGGCTGCCTGCGATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCGGGCAAGCGCCGCGTGCCGCCGCCAGTGCTGCGCGCGCCCGCCGCACAACCCTCCGGCAATAACGCCAAATCATCAGGGGGAGGCTGGGCGACACTGACATCTACGAACGCGTGGGCGGCTCGCAGCCAGACCAAGCCACAGCCAGCCAGCACCGAGTCCAAAATCGACTACTTCGACAACCCGCCCGACAACTAG
Protein Sequence
MSQWNSTYAYNGQYQAGNAWNGDVNGQYVNQPYYPNRPDSSGQYVSFNEFLTQMQTNNTVPNNAQHYTNVPYENYAPAQYNYQNMPSSSQDPHLESFNYNTSTPNMPNNVDPSYHVNVQSQYNVNPTFTSDLILKSNLTPTATEFVPKSMLKMSSSKQNVTDGPSSSNSIPEHVNNLGSSSDTNWRERPQTSHRNGEQNGRDTGNRTSRNIRNNDNLTRHRESNHSDNKSNELPQENSRSNDFRSRNHDTNNRNYENARNYDLGNHSQDSNYQNPDNNRSHNSNARNDKKAQSKTNGKARAKDSDARTFYNSSVPKDSQDVRNNRNEGSNRQKNWAGSQRIRGVDRHNPDDEQYANTYLHPREDKVDRVKDRPENISSPMKFRNKTIDQAHKEMTQRERLSEQLDNGTLECLVCCERVKQIDPVWWCANCYHVLHLKCIKKWATSSLVEGKWRCPACQNTNDAIPSEYRCMCGAVRAPEYHRGMSGAHTCGKACKRPRSCPHPCTLLCHPGPCPPCQATVNKQCGCGAETRSILCSSKLPQVCGRVCQRTLLCTAHKCTKECHEGPCDVCTETITQTCLCPARRQRTVSCSAATAGQDWFLCGGVCARVLACGAHVCRQRCHEPPCQPCPLLPELVHSCPCGKMKVPKDQRKSCTDPVPLCGNICAKPLQCGPAGDKHFCKSKCHQGDCSVCQDKTVVQCRCGHASREIPCELLQDLSDNVLCQRKCNKKLSCGRHKCRSVCCVSTTHRCGVVCGRALSCQQHRCEEFCHTGRCAPCPRLNFDEVRCECGAEVLLPPVPCGARPPPCAAPCRRVRACNHPPHHSCHSGDCPPCVVLTTKRCHGNHEERKTIPCSQEEFSCGLPCGKPLPCGKHNCIKTCHKGPCDTGKCTQPCTEKRAGCGHPCAAPCHVGAAEGSAAAACPSAAPCRRPVRATCACGRREQERACCDNTRDYDRMVSALAATKIQDGGSVDLADVQRPANVLKTLECEEECRAEARARRLALALQLRNPDVSSKLAPRYSEHVRATAQREPAFALHVHDKLTELVQLAKKSKQKTRSHSFPSMNWQKRQFIHEMCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPPPVLRAPAAQPSGNNAKSSGGGWATLTSTNAWAARSQTKPQPASTESKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00429576;
80% Identity
-