Hlin004940.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyles lineata
Gene Symbol
-
Assembly
GCA_030180105.1
Location
JARJEE010000005.1:5926779-5931882[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.077 5.6 8.2 3.1 2 22 181 201 180 201 0.96
2 16 3.1 2.2e+02 3.2 1.0 1 23 299 321 299 321 0.82
3 16 0.48 34 5.7 0.3 2 23 456 477 455 477 0.96
4 16 0.0009 0.065 14.3 0.3 2 23 557 578 556 578 0.97
5 16 0.17 12 7.1 2.2 1 23 586 608 586 608 0.98
6 16 0.14 10 7.4 3.2 1 23 645 667 645 667 0.95
7 16 0.00022 0.016 16.2 4.0 1 23 675 697 675 697 0.99
8 16 0.22 16 6.8 2.6 1 23 782 804 782 804 0.98
9 16 0.16 11 7.2 0.4 1 19 859 877 859 878 0.97
10 16 0.078 5.6 8.2 0.1 1 23 887 909 887 909 0.95
11 16 0.0015 0.11 13.6 0.6 1 23 979 1001 979 1001 0.96
12 16 0.012 0.86 10.8 1.1 1 23 1007 1029 1007 1029 0.96
13 16 0.0061 0.44 11.7 2.6 1 23 1119 1141 1119 1141 0.97
14 16 0.00015 0.011 16.7 1.4 1 23 1147 1169 1147 1169 0.99
15 16 0.67 48 5.3 2.2 1 23 1260 1282 1260 1282 0.96
16 16 0.0032 0.23 12.6 3.7 1 23 1293 1315 1293 1315 0.98

Sequence Information

Coding Sequence
ATGGGCCTACAATACTCAGAAAAGGACATAATCACATCAAACAGTGACTCCAATGATGCTGAATCAGGAATGAAAGATCAGTCGTTGCGCGATCAAACTCACGCAATGAATGAAAATTCTCAAGactcaaaatcaaataaacaatgCAAGAAAACTCCAAGACCTATACCGCAACTCATTCCACTAAATGCATCCACGCCCaaccaaaataaaacatctcCTGGCGAACCACCGGCAAAGAAATTTAAAGAATCAACGAATGAAACTAGTAACCCTAGCTCAGAAAGTAAATCCGACAGTCAGCCGTTTGTCCCTTCGATGAGTGCAAAAGAGTCTGGAACGAGAAAGAAAAATGAATCATTTTTTGATCGATTGAAAGAAAGACTTCTTACAGAGACTGGAGAAAATGGTTCACTCACGTGTAAGAATTGCGGCTTTGAAAGCAAATGTTTGTCAGAACATTCTGTGCATGAAAAAAATTGCACGCCATTGGGAAATCGCACTACCACAAATACATTGATGTCTAGTTTAAGTTCAACACGCTGTCAAAACTGTAGACATAGATGCAAATCAAGCGCTGACTTAGTTGTCCATATGAAAACTTGTAGAAAAGCTGAGAGAGTGGGAGATGTAACATTTGAAGATACAAAGAGTCAAGAAAGTAGTGAAGTTTCCTCTAAAACGGAAAAAGATAGCGAGCCGCATCCTATGGAAAACGTAGTTTTCGTTtggaataatattaatcatGAGACATCTAAATTCGACACACCAttggatataaatataaatgatgatTCAACGCTTCCTGAAATGAATCGAAGTTATGATAATGACCCAGTTGATGATAATGAAAGTATGAACTTATCCCCAAGTCAAGCTGTTGGAaagaatgtttttaaatgtccCCATTGTCCGTTCTGGGCGTCTACCGCATCTAGGTTCCACGTTCACATTGTaggacatttaaataaaaagcccTTCGAATGTTCTTTGTGCAAGTACAAGTCTAATTGGCGTTGGGACATAACGAAACATATTAAACTGAAATCCGCTAGAGATCCTGAGCATAACGAAGCCAAGGTGCTGATGACTGACGAAACTGGCAGAAGgaattatagtaaatatagtAAATTCTTGGCAATGCCAGTTTTGAATGAGAATGGTGAGAATGAATTTCATTACTTGGATTCAAATACAACAGTTGATGCTTCAATGGAAGTTGATGAGTCATTCAGTGATGCGAATGACGTAACAAATGCATCAGGTGACATGCAACCCCTGAACCTACAGACCCAGCACATCGAACTTAAGTCGGATGCAATGGATATGAGACAAGCAGACAAGAAAGTTAAAAAGACATTGTGGAAATGCAAAAAATGCAATTATagAGATCCATCAAAAGAGGCTCTATTGGAGCATGTTCGCGAACATTCCAGAGTGGACACTAATGACGAGGATCCGAAAAATCCTAGCGGAAAGAAACCTGAAAGCACACCAGACGCATCGGACTTAGCATATCGCTGTGGTCACTGCAACCAACTATCCAACTGGAAACACGTCATACAGCGCCATTGCCGATTGAAGCATGAAGGTGTTATCAAAGTAATTACTACGGTGAAACCAAAACCGGACCCGGCGACTTCAGCTACGGGTGACCCAATCAATGACAGATGCCCTAAATGTCCATATCGAACAACCGACAAGAATGGACTTATAACTCATATCCAGCAACATCAGCCTTCCACACACTCTATATTCAAGTGCTATTTCTGTCCATACTTCGTCAAAGATGAATGTGAGTTAGTGCAACACTTACAACTCCACGGCGTCACAGACCCAGAGGATTACATTTCTAAAGCTATGGGCTGCAGATCACCATTACCAGAGCCACAGGCTGTTCTTACTCCTTCCATCTCAGGCAGCACTAAACGACACCGATGTACGGAATGCCCTTATGAGACGAATAGTAAATCTCAATATATGTATCACGAACAGTTCCACAGACTGCCACCAGACACTCCGTACAAATGTCCAGAATGCAACTACAGTGTGTCTAAAAGACATTTACTTCATCAACATTTAAGAGTACATGGTATTATTCCGAAGAAACACGAAACAGAGGCAGATTTGGAAGCCGTGCCATCGATtccaaaaatagaaaacaacaCAGATGTTCCTACCAACAACCTAGATGAGACACCATTTGTTTGGGTTTCGGCGAAAAATGAATTccataaaatgtacaaatgcCGCTACTGTTCTTATGTGAATtcacaaaaatgtaaaattccTAATCATGAAAAAATTCATTGCTTCACATTCGAAAATAGCGATGTAACGGTGTACAAATGTTTGGAATGTAAATTTACTTGTGATAACTCAGGAAGATTAGCTGAACATTCCAAATCTCACGGTGAAATATATGGTCGAATTTACTGCCCAGTTGAAGATGACGTTCCAGATGAAGAACAAGTGGCAAAATTACGCAAAGTAATCGCTCTAGAAAAATCAAATTCTGCTGAAGTGCCTAAGGATGAACTTGTTATTAttgaaaacaaagaaataaaattattatatttctgtcaAAAATGTCCAGCGAGATATTTTACTGAAAGCGAATTAAAAGTACACGACGCCTTCCATGATTCGACGTATTTGTATAAATGTAAGAATTGTGATTTCTCAGTACCCGAAGAAGATGAAttaatattgcataatattGTACACTCCGATGAGTATCATACAAAAACCAAAATGCTTAAATTTGTCCACAACCAGCATCCTCTACATAAAGAGCCTCGGCTAGAACTTGCTCATTGTCAAGATACCTTAGAAGTCGCATGGGTAATAAATCctattaaacaaaatgaaaatgatcATAATATTGAAATGACTACTAAGAAACACAATGAATCGAGACACATTCCAAAACAATATACTTGTAAAGAATGCCCTGCAAAGTTTTTCAAAAGTTCTGCACTTAGTTATCACATGGGTTTACATGGAGGAGAAGGTGAACACAAGTGCAAAAAATGCAGTTACGCAGTCAAAAATGTTGGTAATTTAGCAAAACACGAACTTTTGCatgaacaagaaaataaagCGAGTAACTGCGATTACGAATCTGGAGAGGATGTGGACTATAAAAATGTTCCACTATCAGGAACCGATCTGTTCCAGAGAAAAACTGAAGCCCAGAAGAGGGTATTAATTGATAAAGATAAATTAGTCAAACCCAATGACCATTTTCCACCCGTGCTACAAGCTGATCCTCAATTTGGTTATCTTATGCACGGTAACCCTGAATTTATCTACCCAACATACTTGAAAAACGGACGCCAAAAAGAAAAGCGTTACAAATGCCATAAATGCCCTTCCGCTTTTGAAAAACGGGAGCAATACAAAATCCATCTCTCATTGCACGGATCCAAGCAACGATACAAGTGTGAACTTTGTGATTACTCCGTGAAGTACTATGCCAACTATGTTCAACATATGAGAAAACATCAAATGAATGACGAAGCTCAAGCTGAAAGGAAAAAAGGCGGTAGTGGGTTTTCTGAACCTGAAAGTCACGATATTAAACAGGAAGACAGTTCAGATAACATTAAGCTAGCGATAAAAACAATGCCTAGAGGAACACCAAGAAGTGATTTCCAACAGTTTTCGATCAGGGACCAGCAAACACTGCGATTACTGCAGCGAAGACGGTCGATAAATAATGCAGGAAAAGAAACCAGTACTACGGAAACATCGCCAACAAAAGAACGCAAGTTACATATGTGTTTGTTGTGCCCATACACTAACCAGCGACAGGATGCCTTGACCAATCACTACAAACGGCATGATGATAGCGACGCTCTAACCACGGGTAACCACAAGTGCTCTTACTGTGACCTTGTTGTTATTCAATCTCATTTCTTGCGGGAACATTTAAAAACGCATTTCAATTACCACAAAACTCTAACTCCCGAATGCTTTGTGGCAAACGAAAATGTCAGTTTTACCATAACAAAAGTGGACGATAAAAGTGAGCCAGTTGATCTCAAATTAGATTTCCAAAATAAGAACTATAAGTGCAATGAAGAGAAAAtattcgtaaaaataaatactggaGAGTTAATGGTAGAATAG
Protein Sequence
MGLQYSEKDIITSNSDSNDAESGMKDQSLRDQTHAMNENSQDSKSNKQCKKTPRPIPQLIPLNASTPNQNKTSPGEPPAKKFKESTNETSNPSSESKSDSQPFVPSMSAKESGTRKKNESFFDRLKERLLTETGENGSLTCKNCGFESKCLSEHSVHEKNCTPLGNRTTTNTLMSSLSSTRCQNCRHRCKSSADLVVHMKTCRKAERVGDVTFEDTKSQESSEVSSKTEKDSEPHPMENVVFVWNNINHETSKFDTPLDININDDSTLPEMNRSYDNDPVDDNESMNLSPSQAVGKNVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYSKFLAMPVLNENGENEFHYLDSNTTVDASMEVDESFSDANDVTNASGDMQPLNLQTQHIELKSDAMDMRQADKKVKKTLWKCKKCNYRDPSKEALLEHVREHSRVDTNDEDPKNPSGKKPESTPDASDLAYRCGHCNQLSNWKHVIQRHCRLKHEGVIKVITTVKPKPDPATSATGDPINDRCPKCPYRTTDKNGLITHIQQHQPSTHSIFKCYFCPYFVKDECELVQHLQLHGVTDPEDYISKAMGCRSPLPEPQAVLTPSISGSTKRHRCTECPYETNSKSQYMYHEQFHRLPPDTPYKCPECNYSVSKRHLLHQHLRVHGIIPKKHETEADLEAVPSIPKIENNTDVPTNNLDETPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCFTFENSDVTVYKCLECKFTCDNSGRLAEHSKSHGEIYGRIYCPVEDDVPDEEQVAKLRKVIALEKSNSAEVPKDELVIIENKEIKLLYFCQKCPARYFTESELKVHDAFHDSTYLYKCKNCDFSVPEEDELILHNIVHSDEYHTKTKMLKFVHNQHPLHKEPRLELAHCQDTLEVAWVINPIKQNENDHNIEMTTKKHNESRHIPKQYTCKECPAKFFKSSALSYHMGLHGGEGEHKCKKCSYAVKNVGNLAKHELLHEQENKASNCDYESGEDVDYKNVPLSGTDLFQRKTEAQKRVLIDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGGSGFSEPESHDIKQEDSSDNIKLAIKTMPRGTPRSDFQQFSIRDQQTLRLLQRRRSINNAGKETSTTETSPTKERKLHMCLLCPYTNQRQDALTNHYKRHDDSDALTTGNHKCSYCDLVVIQSHFLREHLKTHFNYHKTLTPECFVANENVSFTITKVDDKSEPVDLKLDFQNKNYKCNEEKIFVKINTGELMVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01359347;
90% Identity
iTF_01430338; iTF_00428573; iTF_00429486;
80% Identity
-