Hlin016759.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000020.1:1950353-1960991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.81 58 5.0 0.6 2 20 7 26 6 28 0.87 2 12 0.17 12 7.1 0.3 1 12 205 216 205 225 0.86 3 12 1.7e-05 0.0012 19.7 0.4 1 23 382 404 382 404 0.98 4 12 0.047 3.4 8.9 2.7 1 23 417 439 417 439 0.98 5 12 4.8 3.5e+02 2.6 0.3 1 8 464 471 464 485 0.71 6 12 6.9e-06 0.00049 21.0 0.6 1 23 491 513 491 513 0.98 7 12 0.0013 0.094 13.8 2.3 1 23 529 551 529 551 0.98 8 12 1.5e-06 0.00011 23.0 4.5 1 23 557 579 557 579 0.98 9 12 0.00057 0.041 14.9 6.3 1 23 585 607 585 607 0.98 10 12 0.00051 0.037 15.1 2.2 1 20 613 632 613 635 0.93 11 12 5.7e-05 0.0041 18.1 0.9 1 23 639 661 639 661 0.98 12 12 0.00068 0.049 14.7 0.1 1 23 669 692 669 692 0.96
Sequence Information
- Coding Sequence
- ATGGAAGACCTAAAATTAAAGTGTCCGCTTTGTTGCGATAAACTTTTTGATACCAAGCAGGAGCTCCTAGAACATCTGACAAACATTTATGACAATTTATTATGCCCCATTTGTAGCAGTAAATGGTCTACAGTAGTTCATCTTATTGAACATTTGAACCTTGATAATTGCCAAAATAATAGCATATCTAAAAGGCCTAATGGTTTTGAAAATGAACCACTAGAACTAAACACTTGCAGTACTACAGAAAACTCTGTTAATGTTATTAATGAAAGTCCAAATTCAATATCTGAAAATAATTTCTCAGGAGTCCACACTTTGGACACTGAAGTTGAGAACGGAGAAGTTGGCAAGATGTATGTTGAGTTACTCAGTAAACAGTTACTAAAGCCGTGTTTACAGACACAGGAGCTAAAACTTGTGAAACATGATGGTGGCAGCCACTATGTGATCATCACACAGCCAAGCGCTGAGATTAGTGTTGACACAGTAGTTACCAAGCAAAATAATGATGGAACTATATCCATGACCACTGTAAAAGatATGCAATTAGAGTCAGACACACTAATAGCACCGACCGAACATGAGCCAGAAGACAATCAGGAGGAACTGTATAGTTGCAACACTTGTGGGGTATCTTTCTCATCAGTACTAGAACACATACAGAACTATCACAATGATCAGGAGGTGGTTGTAGAGGAACCCTTAGAAGAGCCAGATCAAGATGCACAATATGTTCCGGTGGAGGATATGATGACAAATGATAAAGTTGCCTCACGAAGAATGATTACTGACACTGGGGACATTGTTGAGGCGCCTTCATTGTCTAAAGAGGAATCGGCAACACAAGAATCTACTTCGGAAGTGACCACTGTTCCTGTAGAATTGTCAGAGCCCGCAACGCTTGCAACGTCGCGCGTTTACACCACGCGCTATGTACAGATAGACAATTTATGTGACAGTGTCGTGAAGGACATTAAGGAGTCTGAAAataaagataaaaatgttcCGTACCACAAAGTAATTGTGAAAGAATTGAAGACGCAAGTAGGAACTAACGTTAAAATGTATCATTGTAAATCGTGCCAGATTTACGTTAGCAATTTGAACGAGTTTAAAATACATCCTTGTAAAGCATtGAAGTATGCCTGCCCGCATTGTCCTGTAACATATGAAAATTCCAAATCACTATACGCACATAtgaaaatacacaaaacaaaGCCAGACACCCCGGACGCGCCACCGTCGTACGAGTGTGAAGTTTGTTGCACATTGTTTCCAACGAATAAATCGCTCAAATTACACAAAAGAATGCACGATCCAATGAAAGCTCGTCCAATAGAACTGCCCGTAGAAAATAAAGATGGTTCAGTGGTGTCCAACTGCAAATACATGTGCCAGATATGCGACAAGTTAATACCGCTGGACTACCGGACGGTACATCAGAATTCGCACAAGTCATCCAACATGTACAACTGTGGTATATGCAATAAGAAGTTCACGTCCAACGAGTACTTGGATATGCACATGAATGTACATAACTTAGATAAGGTGCCTGTAAGCAAGCAAGACAAATCACTGCCATACAATTGTTTGTACTGTAATAGAAGGTTCGCCAGGCCACACGAGAAAGTCAAACATGAAAGGATACATACAGGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCATACCGGCGCGCGCCCCTACTCCTGCCCGCACTGCGGGAAACGGTTTAAAGCCCACAGTGTATACAATCACCATTTATTAACGCATTCGGACGTGCGGGCGTACAAGTGTCCGTTCTGTCCGAAAGCGTTCAAAACTTCAGTGCAGTTAGCGGGACACAAAAACTGTCACACGAAACCCTTCTCTTGTCAACATTGTAACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGACGCACCTGCGGCAGAACAACCTGAAGTTCTCGTGCTCGCTGTGCGGCGCGTCGTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGCGCACAACCAGGACGTCGACGCCAAGGAGAACTCGCTCGGAACTCAGGACGAGGAATGGACACCTAGAGAAACGGAAGACATGCAATCTCTCAATAAAGAGTTGTCACCAGAGGTTCTCGGAATGAGTAGTAACGAGTTAATAATTCCCTAG
- Protein Sequence
- MEDLKLKCPLCCDKLFDTKQELLEHLTNIYDNLLCPICSSKWSTVVHLIEHLNLDNCQNNSISKRPNGFENEPLELNTCSTTENSVNVINESPNSISENNFSGVHTLDTEVENGEVGKMYVELLSKQLLKPCLQTQELKLVKHDGGSHYVIITQPSAEISVDTVVTKQNNDGTISMTTVKDMQLESDTLIAPTEHEPEDNQEELYSCNTCGVSFSSVLEHIQNYHNDQEVVVEEPLEEPDQDAQYVPVEDMMTNDKVASRRMITDTGDIVEAPSLSKEESATQESTSEVTTVPVELSEPATLATSRVYTTRYVQIDNLCDSVVKDIKESENKDKNVPYHKVIVKELKTQVGTNVKMYHCKSCQIYVSNLNEFKIHPCKALKYACPHCPVTYENSKSLYAHMKIHKTKPDTPDAPPSYECEVCCTLFPTNKSLKLHKRMHDPMKARPIELPVENKDGSVVSNCKYMCQICDKLIPLDYRTVHQNSHKSSNMYNCGICNKKFTSNEYLDMHMNVHNLDKVPVSKQDKSLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYSCPHCGKRFKAHSVYNHHLLTHSDVRAYKCPFCPKAFKTSVQLAGHKNCHTKPFSCQHCNRPFASLYAVRVHMETHLRQNNLKFSCSLCGASYARAFALKDHVKQAHNQDVDAKENSLGTQDEEWTPRETEDMQSLNKELSPEVLGMSSNELIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01430162; iTF_00428408; iTF_00429283; iTF_00820349;
- 90% Identity
- iTF_00820349;
- 80% Identity
- -