Basic Information

Insect: Deilephila porcellus
Gene Symbol: -
Assembly: GCA_905220455.1
Location: LR999987.1:8372115-8382045[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.69 51 5.0 0.6 2 20 7 26 6 28 0.87

2 13 0.14 11 7.1 0.3 1 12 205 216 205 225 0.86

3 13 10 7.4e+02 1.3 1.0 1 19 355 373 355 373 0.95

4 13 3.2e-05 0.0024 18.6 0.3 1 23 380 402 380 402 0.98

5 13 0.0045 0.33 11.9 2.9 1 23 415 437 415 437 0.99

6 13 4.1 3e+02 2.6 0.3 1 8 462 469 462 483 0.71

7 13 5.8e-06 0.00043 21.0 0.6 1 23 489 511 489 511 0.98

8 13 0.0046 0.34 11.8 4.4 1 23 527 549 527 549 0.98

9 13 1.3e-06 9.6e-05 23.0 4.5 1 23 555 577 555 577 0.98

10 13 0.00049 0.036 14.9 6.3 1 23 583 605 583 605 0.98

11 13 0.00043 0.032 15.1 2.2 1 20 611 630 611 633 0.93

12 13 4.8e-05 0.0036 18.1 0.9 1 23 637 659 637 659 0.98

13 13 0.00059 0.043 14.7 0.1 1 23 667 690 667 690 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.69	51	5.0	0.6	2	20	7	26	6	28	0.87
2	13	0.14	11	7.1	0.3	1	12	205	216	205	225	0.86
3	13	10	7.4e+02	1.3	1.0	1	19	355	373	355	373	0.95
4	13	3.2e-05	0.0024	18.6	0.3	1	23	380	402	380	402	0.98
5	13	0.0045	0.33	11.9	2.9	1	23	415	437	415	437	0.99
6	13	4.1	3e+02	2.6	0.3	1	8	462	469	462	483	0.71
7	13	5.8e-06	0.00043	21.0	0.6	1	23	489	511	489	511	0.98
8	13	0.0046	0.34	11.8	4.4	1	23	527	549	527	549	0.98
9	13	1.3e-06	9.6e-05	23.0	4.5	1	23	555	577	555	577	0.98
10	13	0.00049	0.036	14.9	6.3	1	23	583	605	583	605	0.98
11	13	0.00043	0.032	15.1	2.2	1	20	611	630	611	633	0.93
12	13	4.8e-05	0.0036	18.1	0.9	1	23	637	659	637	659	0.98
13	13	0.00059	0.043	14.7	0.1	1	23	667	690	667	690	0.96

Sequence Information

Coding Sequence: ATGGAAGACTTAAAATTAAAGTGTCCGCTTTGTTGCGATAAACTTTTTGATACCAAGCAGGAGCTCCTAGAACATCTGACAAACATTTTAGAAAATTTATTATGCCCTATTTGTAGTAGTAAATGGTCAACAGTAGTTCATCTTATTGAGCATTTGACCCTTGATAATTGCCAAAATAATAGCTTATCTAATAGACCTAGTGGTTTTGAAGAAGAATCACAAGAACTAAGCAAAGGCAGTACTACAGAAAACTCTGTTAATGTTATTAATGATAGTTCAAATCCAATATCTGAAAATAATTTCCCAGACGTCCACACTCTGGACACTGTAGTTGAGAACGGAGAAGTTGGCAAGATGTATGTTGAGTTACTTAGCAAACAGTTACTAAAGCCGTGTTTGCAGACACAGGAGCTAAAACTTGTGAAACATGATGGCGGGAGCCACTATGTGATCATCACACAGCCAAGTGCTGAGATTAGTGTAGACACAGTGGTCACCAAGCAAAATAATGATGGGACTATATCAATGACTACTGTAAAAGATATGCAGTTAGAGTCAGACACACTAATAGCTCCGACAGAGCATGAGCCAGAAGACAATCAGGAGGAGCTGTATAGTTGCAACACTTGTGGGGTGTCATTCTCATCAGTACTGGAACACATACAGAACTACCACAACGATCAGGAGGTTGTTGTTGAGGAACCCTTAGAAGAGCCAGATCATGATGCACGGTTTGTCCCGGTGGATGATACGACGACAGGTGATAAAGTGGCATCCCGAAGAATGATTACGGACACTGGCGACATTGTAGAGGCACCATCATTGACTAAAGATGAATCGGCAACTCAAGAATCTCCTCCAGAAGTGACCACCGTCCCAGTAGAATTTTCCCAAGAGCCCCCAACATCTCGCGTATACACCACACGTTACGTACAGATAGACAATTTGTGTGACAGTGTCGTGAAGGACATTAAGGAGTCTGAAAATAAAGATAAAAATGTTCCGTACCACAAAGTATTTGTGAAAGAATTGAAGACGCAAGTAGGAACTAACGTTAAAATGTATCATTGTAAATCGTGCCAGATTTACGTTAGCAATTTGAACGAGTTTAAAATCCACCCTTGTAAAGCATTGAAGTATGCCTGTCCACATTGTCCAGTAACTTACGAAAATTCCAAATCACTATACGCACATATAAAAATACACAAAACAAAACCAGACACCCCAGACGCGCCACCGTCGTACGAGTGTGAAGTTTGTTGCACAATGTTCCCAACGAATAAATCGCTTAAATTACACAAAAGAATGCACGATCCCATGAAAGCTCGTCCAATAGAACTGCCAGTGGAAAATAAAGATGGCTCAGTGGTGTCCAATTGTAAATACATGTGCCAGATATGTGACAAGTTAATACCGCTGGATTACCGGACAGTACACCAGAATTCGCACAAGTCATCCAACATGTACAACTGTGGTATATGCAATAAAAAGTTCACATCCAACGAGTACTTGGATATGCACATGAATGTACATAACTTGGATAAGGTGACTGTAAGTAAGCAAGACAAATCACTGCCATACCATTGTTTATACTGTAACAGAAGGTTCGCCAGGCCGCACGAGAAAGTCAAACATGAAAGGATACACACAGGCGAGAAGCCTCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGCGCGCGCCCGTACTCCTGCCCACACTGCGGGAAACGGTTTAAAGCACACAGCGTGTATAATCACCATTTATTAACGCATTCGGACGTGCGGGCTTATAAGTGTCCGTTCTGTCCGAAGGCGTTCAAAACCTCAGTGCAGCTAGCAGGACACAAAAATTGTCACACGAAACCTTTTTCTTGCCAACACTGTAACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGACGCACCTGCGGCAGAACAACCTGAAGTTCTCGTGCTCGCTGTGCGGCGCGTCGTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAAGTTCACAACCAGGACGTCGACGCCAAGGAGAACTCGCTCGGAACTCAGGACGAGGAATGGACACCTAGAGAAACGGAAGACATGCAGTCACTCAACAAAGAGTTGTCACCAGAGGTGAACGTTCTCGGAATGAGCAGTAATGAGTTAATAATTCCCTAG
Protein Sequence: MEDLKLKCPLCCDKLFDTKQELLEHLTNILENLLCPICSSKWSTVVHLIEHLTLDNCQNNSLSNRPSGFEEESQELSKGSTTENSVNVINDSSNPISENNFPDVHTLDTVVENGEVGKMYVELLSKQLLKPCLQTQELKLVKHDGGSHYVIITQPSAEISVDTVVTKQNNDGTISMTTVKDMQLESDTLIAPTEHEPEDNQEELYSCNTCGVSFSSVLEHIQNYHNDQEVVVEEPLEEPDHDARFVPVDDTTTGDKVASRRMITDTGDIVEAPSLTKDESATQESPPEVTTVPVEFSQEPPTSRVYTTRYVQIDNLCDSVVKDIKESENKDKNVPYHKVFVKELKTQVGTNVKMYHCKSCQIYVSNLNEFKIHPCKALKYACPHCPVTYENSKSLYAHIKIHKTKPDTPDAPPSYECEVCCTMFPTNKSLKLHKRMHDPMKARPIELPVENKDGSVVSNCKYMCQICDKLIPLDYRTVHQNSHKSSNMYNCGICNKKFTSNEYLDMHMNVHNLDKVTVSKQDKSLPYHCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYSCPHCGKRFKAHSVYNHHLLTHSDVRAYKCPFCPKAFKTSVQLAGHKNCHTKPFSCQHCNRPFASLYAVRVHMETHLRQNNLKFSCSLCGASYARAFALKDHVKQVHNQDVDAKENSLGTQDEEWTPRETEDMQSLNKELSPEVNVLGMSSNELIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00819443;
90% Identity: iTF_00820349;
80% Identity: -