Hlin006575.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000006.1:15728372-15749789[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 4.1e+03 -2.7 0.1 258 284 73 98 35 100 0.61 2 3 2.2e-76 5.9e-72 243.1 24.5 1 297 112 390 112 392 0.89 3 3 1 2.7e+04 -7.3 15.0 1 44 389 432 389 454 0.69
Sequence Information
- Coding Sequence
- atggGCCAGCGATCGGAAGTGGCCACGCCTGAAAACAGCGACGAGGAGAGCGGGGATGCCTTCACCGATGGAGACTTCGGAGACTCCGATGAAGATGTCGTCGAACGTAGTGACACTAACTCCCACATACCAGTCAATGAGACTGTTAATCAAGCAGTAACAACAGTTAATGGCAATGCCGCTCTGGATGATCCAAGTCCAgataaatctaaaattaacgGACGGAGAATAAGTGAGAACCATACTGAGGATGAGGGTATTACAGATGCGAGAAGGGATTCACACGAACAAATACCTTCCATCGTTGGGATACTTGGAAACCAGCAGAATCACGCGGAACAGCGTCTGGCGGCGCGTCGAGCCGCGCGTGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGAGACAGCAGCGTGAACAAGAGGACCATGCAGACAAGGCCTACGATATGTATGCAGAGACGGTGGGGCGGCGCACCGGTGGGCGGCTGGCGGCGCTCAGCCCCGGCGGCGTGCACTCCCCGCGCCGCAGCTCCGAAGACTCTGTCGACGACAGCTTCAATGTCAAGGATCTTAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAGCACCGCGAGAAATGCTCCGCCCACGAGCGTCTGAAGCGCGAGCACGTGTCTCTGGAGCGCGAGGTgtgcgcggcgcggggcgcggtgCGCGCGCGGGACGCGGCGGCGCACGCGGCCGGCTTCGCGTTCGTGGACGCCAGCAGCGACGCGCGGGTCGACGACGACGCGCCGCCGCTCGCGCTCGTCAGCCACCGCGCTGAACAGCTGCTTAATGATGCCGGGGAGGGGACGCTCGACGTGCGATTGCAGAACCTGGTGAGTTCCAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTCACGCTCAACGAGGAGCGCGCCGCCAGGCACAACGGCGTCGCCAACCACCACGACCACCACTACGAGACAGAGTTGGAGGCCCTCCGCAAGTCGGTGTCGGAGGCGAAGGCCCGCGCGGCCCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGAGCACGGCGCGCCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGCCGCCGCCTGCAGAGAGAGGCCAGGGAGGCACTAAACAGAGTGGAGGAGTTGGAGACGGAGAACAGTCATCTGACGAAGAGGCTGGACAAGCTAAAGAACGCCAAGTCTGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPENSDEESGDAFTDGDFGDSDEDVVERSDTNSHIPVNETVNQAVTTVNGNAALDDPSPDKSKINGRRISENHTEDEGITDARRDSHEQIPSIVGILGNQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGGRLAALSPGGVHSPRRSSEDSVDDSFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSAHERLKREHVSLEREVCAARGAVRARDAAAHAAGFAFVDASSDARVDDDAPPLALVSHRAEQLLNDAGEGTLDVRLQNLVSSKQALESEVRKLKLTLNEERAARHNGVANHHDHHYETELEALRKSVSEAKARAARAEAEAALQAASTARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_00820103;
- 80% Identity
- -