Hfas000102.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_905147375.1
- Location
- LR990194.1:1443793-1457301[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-72 3.9e-68 230.1 21.7 1 297 122 403 122 406 0.90 2 2 0.22 4.4e+03 -3.2 13.7 194 270 387 461 377 479 0.64
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCAGAAGTGGCCACGCCTGATAACAGCGACGAGGAGAGCGGCGATGCCTTCACCGACGGAGACTTCGGAGACTCGGACGATGAAACGGTTCTCGAACGGAACGGAACCAAACCTTCAAATATCCCCGTGAACGAGACGGTCAATGAACAGGTGCAGAAAAGCATGACCAATGGCAACTGCTCTCACAATGGGCACGAAGCGTCTCCTGCGGAAGATCTGCCCAAAGTGAACGGACGGAACAGTGACAATCAATGTGATGTGGATTATAGTGCGACATCAGATGTGAGACGAGATTCCCATGGAGATCAGAATCCTTCGATCGTTGGAATTCTCGGAGACCAGCATAACCATGCGGAACAGCGGCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGGGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTATGCAGAGACGGTGGGGCGGCGCGGCGGCACGCGGCTCGCCGCGCTCAGTCCAGCCGCTAGCCTGGTGCACTCGCCCAGGAGGAGTTCGGAGGACTCGGCGGACGACACCTTCAACATTAAGGATTTGAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGCACTACCAGCTGGAGCTGCTCAAGGACCGCATCCAGGAGCTGCAGGAGGAGCACGTGCAGCTGCAGCGCGAGCACCGCGAGAAGTGTTCCTCGCACGAGCGCCTGAAGCGCTCGCACGTGTCCCTGGAGCGCGAGCTGGCGGGCGCGCGGGACTCCGTGCGCGCGCGGGACGCCGCCGCCGCCGCCGCGGGCTTCGCCTTCGCCGAGGCCGCGCCCGGCGCCGCGCACGCCGAGGGCTTCGGCGCCGTGCCGCCGCTGGCGCTGCTGTCGCACGACCAGGACCGCGCGCTCGGCGACGTCGGCACGCTCGACGTGCGGTTGCAGAAGCTGGTGGCGGCGAAGCTGGAGCTGGAGTCGGAGCTGCGGAAGCTGAAGCTGACGCTGCACGAGGAGCGCGCGGCGCGGCAGAACGGCGTCGCCGGCCGGCACGACGCCGAGTACGAGAACGAACTGGAGACGCTGCGCAAGTCCGTGTCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGTGGCGCGGCTGGAGGCGCAGCTGCAGCGGCTGCGGGCGCGCCAGGAGCTGCGGGACGACCAGGAGGAACAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCGAGAGAAGCACTGAACCGAGTGGAAGAGCTGGAAACGGAAAACAATCACCTGACGAAACGGCTCGACAAGCTCAAGAACGCCAAGTCGGCTCTCCTGAAGGAGCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGDAFTDGDFGDSDDETVLERNGTKPSNIPVNETVNEQVQKSMTNGNCSHNGHEASPAEDLPKVNGRNSDNQCDVDYSATSDVRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAASLVHSPRRSSEDSADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRIQELQEEHVQLQREHREKCSSHERLKRSHVSLERELAGARDSVRARDAAAAAAGFAFAEAAPGAAHAEGFGAVPPLALLSHDQDRALGDVGTLDVRLQKLVAAKLELESELRKLKLTLHEERAARQNGVAGRHDAEYENELETLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQELRDDQEEQLKQERRKLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- -
- 80% Identity
- -