Hcyr004962.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282512.1:98912899-98924898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00016 0.011 16.7 0.7 1 23 192 214 192 214 0.95 2 15 0.2 13 7.0 1.8 3 23 222 242 220 242 0.95 3 15 0.00029 0.019 15.9 0.5 1 23 420 442 420 442 0.98 4 15 0.002 0.13 13.3 0.4 1 23 448 470 448 470 0.98 5 15 1.9e-05 0.0013 19.6 2.7 1 23 502 524 502 524 0.98 6 15 0.014 0.93 10.6 0.3 1 23 547 569 547 569 0.94 7 15 0.021 1.4 10.0 0.4 1 23 575 598 575 598 0.97 8 15 0.45 30 5.9 0.3 5 19 609 623 606 624 0.91 9 15 0.00026 0.018 16.0 5.6 1 23 633 655 633 655 0.97 10 15 0.058 3.9 8.6 1.7 2 23 661 682 660 682 0.97 11 15 1.5e-05 0.001 19.9 0.3 1 23 691 713 691 713 0.98 12 15 0.0078 0.52 11.4 0.2 3 23 721 741 719 741 0.97 13 15 9.3e-05 0.0063 17.4 0.5 1 23 747 769 747 770 0.95 14 15 0.014 0.97 10.5 0.0 1 23 780 802 780 802 0.97 15 15 0.0079 0.53 11.4 0.0 1 20 1381 1400 1381 1403 0.93
Sequence Information
- Coding Sequence
- atggaTAGTCAATATGGGGGCATATGGATACAGCACAATTCCAACAATCACGGCGACATGAAAACTGCCGGTCAGTTGATAATAGATCCTCAACCTCCCTGCGATGAAGACCTCATGGCCAGTGCGAATTCATCATCGGATTATATGGCCACCGAAGATGAAGGCGATGCCGCGGCCAATATTGATCAGATTGCGGCGgagaatttaattttcatggcTCGTGACGGTCAAATGGTCGCTGAAATTATATCGGCCGATAGGACGGATAAAAACGGTGCTGTGGTCATGACCAGTGATGGCGAACAAATTGATTGTGATTCGATTATGGAACAGGCTGCGTTGATACAACAGCATGAGGATTCCGGCGGAGGAGTTGTGTACTCGGTGGATCATTATGCCGATACTACTCCGCAAATGGTGACCGAGGAGGTCATCACCGATGACTGGGTGCAACATCAAGGAGAAGAAAGAGTTGAAATACCCGCCGAACAAATCATTTCGAATTCTCAAGTATTATTGGATATTGAAGTGCCCCTGCCCACTGTACAAGACGAGTATACGACTTTACGGCCCTATCCTTGTGACTTTTGCAGTCGTCGTTTTCGCAAGAAAGCCAGCCTTATGAATCACATGGTGGCCCATCAGAACGATCGACCACATTTGTGTAAACTTTGTGGGTCACGATTTCTACGACGGCAGGATCTAATCAATCACTTGAAGGCACACGCAGAAGAGTCAACAGCAACCGAGCCTCAAATGGATGATAGCGATTTTATACATTTTGTTACCGACACCACCTCCTCTTCACAGCGTACTTCCAATGATCATTATTATGAACAAGATTGGAGTGTGCCGGAAGATTCCGTTACAATACCAATAAAATCTAGTCgtaaacaataccaacaacaacaacaaattacctCCATGCATTCGAGCAGCAACCACCACATGTTATTGGACAATGGTATGTCCTCATCGTCAATTGCCCCCACAATGACAACAGCACCGCCCAGAGGTCGTATCAGTCGCCTTAAGCCCAAAGAGGATGCATACGTGGTAGATGTCAGCAATAATTGTACTTCGAATTCATCGGCAATGGCTTCGTCGTACAGCATTGTACAGTGTGATACATTACCGAACTCTGCAGCCGATATAGAATTTACTCAGGATACAACACCCGCCGTGGAAGCCACACAGCAACAAAACCAGCATCAAAGACAAATTATACATTATCCCGTGATTGACGACAACAAACCGTTTGTGTGTCAACAATGTGGTCTGGCTTTCTCGAGAGAGAAAGCAATGCTTTCCCATACCAAGacCCATCGCAATGATTCTCCATTCGAGTGTCCACAATGCAATGAGCTATTTTGGGATCAAAACAGTTTACAGGATCATCAGAAAACTCATCAGTTCGAAGAGAGCAATTCCGAATATGATCCCAACGAAGGAGAAGACGAGACGCAAAGTGAATCAGAGTCCGAACAACAATTATATGGAGAATTTTATTGCAGCGAATGCGGCATGTCCTTCCACCGTCAAGATCTGCTAAGGAGACACGCCAAATCCCATTCAAAGTCGAACAATCAAGGGTTGAACCATAATGGTGCCGACGGCGGCGATAACAATAAAGATCAGCACTGTTGCAATACATGCGGTGAAACGTTTGCTGAAGCTTTGGATTTATTGGCACATGCAGAAATTCATGCACGTTATCCGCCATTTAAGTGTGTGTTATGCGGGGAGTCTTTCTTCGAAGAACCTACCATTAAGAAACATTTACAATCTCAACATGCAAATGATCTGACTGAAAACTCGTGCATTCTGTGCGGCAAGGAGTGTCGAGATCGTAAAGCATTAATCAAACATGCGTGGGATCATTCGCGGGAAAAATGTCATTCATGTTCAAAATGCGGTAAAAATTTTCACAACAAGGCCCGGCTAAAGCGTCATATGGCTTCACATCGTGACAAATCCGTACAATGTGATGTTTGCCATGAAGAATTCCCCGATGGTCGCACTCTCTCCAATCATCGACATTCGCATAGTACCACATCGGCGGGAAAACTATTTCCATGTAATGAATGTGGAAAAACATTCGGCTCTCGGAGTTCGCAGCAAATACATGTGCGCATACACACGGGCGAACGGCCATACGGTTGTCGTTTCTGTTGGAAGGCCTTTGCCGATGGTGGTACTTTAAGGAAACATGAACGTATACATACGGGAGAGAAACCATACGCCTGTTCTGTATGCCCAAGAGCTTTCAACCAACGTGTTGTCCTTAGGGAACACATAAGATCACATCATTCGGGTTTGGATTCCAAAAGAGGTACATATTACTGCACAGTTTGTGGTGCAGATTTGCCATCGTCGGGAGATTTGATTCAACATTTGATACAGCACAGTGACATGAATACTGCAATGCAAAGACAGCCAGTGACCGGTCCACGGAAATACAAACGACGACGTAAATTAAAGCCACACGAAATTGCCCGTTTAAAACGTGAAACCAAGCAGAACGGCGGCAATAGCAGTGATCTTGATATATCCGATATAGATATGGACAATGTCGACGACTTGCTGGCTATGACTGAAACTAATACATCCACTGAAAATACCACCAGCAACCATGAGCTCCCACCATCTGGCAAGACAACAAAGCAGAAGAACGCATCCCCCGATATGGTGGAGACAAACAACAATCGAAATAAATCAGCATACCATACATCGTGCTCTAAGAAAAAATCACACATCGTAATGGATCCCGAAGAGTTTGATCTGGATGTTGGTATGGACGGTGATAGTCCCAAGAAGCCCCGTTTCAATTCAACAAGTAGTGACAAAATCTGGtcaacaaaaacatcgaatgaaGAAACATACAAATCGTTATTGTCCAATTTGGAAACGACACTACAAAGCATTGACACTTTGGTAGTGGGTCCGTCATCGAATCCCATTGAAATGAGTGAaatgacgacaacaacagcaacaaccaggCGCAAGACCAAGCACGAATCTACGGCTCAAAGAACCCAGGTTCATGTTGTGAGATCGGATAAAGACAGTACCACCAGCAGAGGCCGCAGGAGTAGAGCCGATAAGTTAGCTGCCACAAGCAAGCAATTCAAGGGCCCGCAAATGATTCATACAgaaaaatgtaccatttcttcggTGGAGGGCGGAAAAAAGAAATCCAAGTCTGTCGTTACACGTACACAAACCACCAACATTGGCACAACGCCAAAATCAGTGGCTATAGTGGATGATTATGATATAATTTCTCCCGCCTTACAGCCGCCCAAGCAGATCAGTTGCAGTCCTTTGCATATAAAACAAGAGCATGACAACCACCACTTACTGAAGAATCATAATGTGATGTCATCGAATTCGGCAGCCCATGATAGAACACAATCGACTACCACCCGCCATAATAATGATATCTACGATGCTCACTTACTGCTAGAAGCTTCGGGATTACGCAACGACATTGATGAGATGTTAAGATCTCCTTTAAAATCAGATAAACTTGGTGTCTCTCGACAACGTTTCACCAGTGAGTCGTCCACACAATTTCTAGCCGAACAATCGGAAGAAGAACAGCATCTGATAAAAATCGAACCGACTTCACCGGATCTTAGGGAAATCGTTAATGGTGTCAGTTCGGTGAACACATCCGAGGAAGTAACATCAGCTGCCATGGAACTGAATGTGACCACCACAACACAATCACGTAGGTCCTCCAAAGCTACACGATCTCAgagaaattcaaattcaaatagaaaatatttcgaattttcaaatgaCCACCACCTGAATCAAACTAAAACTGCCGTCGGTACAGGACCAAACAAAAGATCGCCCTCGCACAACATGTCCATAGTATCCTCTTCTTCGAAGTCTTCAAAATCGGCCAGAACAGATCCGGCAAAAACTGCAGTCCAAAGTTCAACATCCTATTTGGACTATACCATAGTCGACAGCTTCAATGCGGTTTCTAGTTCCTCGCCCAGCCATCACAATGCCAATTCCTTTGCTTCAATCTCCGCGATAGTATCAGCAGCAGATGCTACCGCTGCGGCCgcctcagcagcagcagctcaaCAGAATCCATCGCCTGCCCGCAAACCTCAGCGCTATTTTGAATGTGAAATGTGCTCAGCTGTATTTTCGGATCGTGCCCAACTCCTAGACCATGTGCCCATACACATCTAG
- Protein Sequence
- MDSQYGGIWIQHNSNNHGDMKTAGQLIIDPQPPCDEDLMASANSSSDYMATEDEGDAAANIDQIAAENLIFMARDGQMVAEIISADRTDKNGAVVMTSDGEQIDCDSIMEQAALIQQHEDSGGGVVYSVDHYADTTPQMVTEEVITDDWVQHQGEERVEIPAEQIISNSQVLLDIEVPLPTVQDEYTTLRPYPCDFCSRRFRKKASLMNHMVAHQNDRPHLCKLCGSRFLRRQDLINHLKAHAEESTATEPQMDDSDFIHFVTDTTSSSQRTSNDHYYEQDWSVPEDSVTIPIKSSRKQYQQQQQITSMHSSSNHHMLLDNGMSSSSIAPTMTTAPPRGRISRLKPKEDAYVVDVSNNCTSNSSAMASSYSIVQCDTLPNSAADIEFTQDTTPAVEATQQQNQHQRQIIHYPVIDDNKPFVCQQCGLAFSREKAMLSHTKTHRNDSPFECPQCNELFWDQNSLQDHQKTHQFEESNSEYDPNEGEDETQSESESEQQLYGEFYCSECGMSFHRQDLLRRHAKSHSKSNNQGLNHNGADGGDNNKDQHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGESFFEEPTIKKHLQSQHANDLTENSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVQCDVCHEEFPDGRTLSNHRHSHSTTSAGKLFPCNECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDSKRGTYYCTVCGADLPSSGDLIQHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHEIARLKRETKQNGGNSSDLDISDIDMDNVDDLLAMTETNTSTENTTSNHELPPSGKTTKQKNASPDMVETNNNRNKSAYHTSCSKKKSHIVMDPEEFDLDVGMDGDSPKKPRFNSTSSDKIWSTKTSNEETYKSLLSNLETTLQSIDTLVVGPSSNPIEMSEMTTTTATTRRKTKHESTAQRTQVHVVRSDKDSTTSRGRRSRADKLAATSKQFKGPQMIHTEKCTISSVEGGKKKSKSVVTRTQTTNIGTTPKSVAIVDDYDIISPALQPPKQISCSPLHIKQEHDNHHLLKNHNVMSSNSAAHDRTQSTTTRHNNDIYDAHLLLEASGLRNDIDEMLRSPLKSDKLGVSRQRFTSESSTQFLAEQSEEEQHLIKIEPTSPDLREIVNGVSSVNTSEEVTSAAMELNVTTTTQSRRSSKATRSQRNSNSNRKYFEFSNDHHLNQTKTAVGTGPNKRSPSHNMSIVSSSSKSSKSARTDPAKTAVQSSTSYLDYTIVDSFNAVSSSSPSHHNANSFASISAIVSAADATAAAASAAAAQQNPSPARKPQRYFECEMCSAVFSDRAQLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00817685; iTF_01231800; iTF_00679739;
- 90% Identity
- -
- 80% Identity
- -