Hten015324.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_009617725.1
- Location
- VTON01000048.1:2362206-2365478[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-99 2e-95 319.5 18.8 1 300 115 416 115 416 0.95 2 2 0.019 3.3e+02 0.3 4.4 120 171 414 465 413 474 0.87
Sequence Information
- Coding Sequence
- ATGGCCGAAGTGGACGCCCAACCGGTGTGGTCCGATCAGCAGCAGAACAGAACCGACGACAGCAGCGATAAAGAGTTCACCGATGGAGACCTAGACTTTTCTGATGAAGAGGACGACGAAGAGGACAAAACTCAGTGTCTCCCCAAAGGGGACTTCTCTAAAATACCTTGCCACGAAGCCGTGAACAACGGTATTCATGATGCATCGAATGGAGATGATGAAGTGCAGCTGCGATGCACAGCATCAGTTGGTAACCCCACAGTGGCCAATGGAAACTCCATGTCTGAGAGTGGAGATGAAGTCGTCAGCATAGTCGGCATACTCGGAAAGGATCACGATAAAGCAGAAGCAAGATTGGCTGCCCGTCGACAAGCACGTGCTGAAGCTCGTGAGATTCGTATGCGAGAAATTGAAAGACAACAGAAGGAACAAGATGAAAATGCCGATCGAGCATACGATATGTATTCtgAAACCTATGTTCGCCCTTCTCGAGTCGCTGGAGGAACTCCGAATGCAAGTGCCGGAGGTAGGATATCATCTACAGGATCTTTTCCCGCTAATTCATATCATTCATCTAGACGGAGTTCTGAAGATTCGTTGGAAGAAATGGGCAGCATCAGGGACTTGAGGCATGAGCTTAAAGAAGTTGAAGAAAAATTCCGCAAAGCTATGATTTTGAATGCTCAATTAGACAATGACAAAGCGTCGTTTTCATATCAACTTGAActtttaaaagataaattagAAGACTTCCAAGAACTATACACACAACTTCAGAGAGAACATAAGGATAAATGTCGTGCGCACGATAGCATAGCTCGAGAGTTCCGTCTTACAAAAGAAGAATTGGATAGGTGCGTTGCAGCGGTGGCGTTGCGAGATAGATGCATTCAAGAAGCTGGACTAGAATTAGTAGCGATAGAAGGCGAAGATGGTGATGGTCCAGGAGCCGCTCTAGTTTCGCGTGCGGGTCGTGAAGCACTAGAAGCCGCCGGTCAAGGAACTTTAGATGTGCGGTTGCAAACTTTAAGTTCAGAGAGACAATCGTTGATTTCCGAAgtcaaacaattaaaattacagtTGGAAGAAGAACGAACTAGGAAAAAAAGTGGTCTTCATAATTCTCATAATGGTCCAACAAATGGTTCAGATAGTGACTCTGATTCTTTCGAACATCAAAgagaAACATCAAAATTGGTAGCAGATTATAAATTCAGAGCTTCTAAAGCTGAACAAGATGTATTAACTCTCCAAGCGACTGTCGCTCGTTTGGAAAGTCAAGTTATAAGATATAAAAGTGCCATGGAACAAGCTGAAAAAATGGAAGATGAACTCAAATGTGATCGTAGAAAACTTCAACGGGAGGCACGCGAAGCTCAGAGTAGAGTCGAAGAGTTGGAAACGGAAAACAATCATCTCAACAAGCGTTTGGACAAACTAAAAAATGCTAAATCTGCTTTGCTCAAGGAACTTTGA
- Protein Sequence
- MAEVDAQPVWSDQQQNRTDDSSDKEFTDGDLDFSDEEDDEEDKTQCLPKGDFSKIPCHEAVNNGIHDASNGDDEVQLRCTASVGNPTVANGNSMSESGDEVVSIVGILGKDHDKAEARLAARRQARAEAREIRMREIERQQKEQDENADRAYDMYSETYVRPSRVAGGTPNASAGGRISSTGSFPANSYHSSRRSSEDSLEEMGSIRDLRHELKEVEEKFRKAMILNAQLDNDKASFSYQLELLKDKLEDFQELYTQLQREHKDKCRAHDSIAREFRLTKEELDRCVAAVALRDRCIQEAGLELVAIEGEDGDGPGAALVSRAGREALEAAGQGTLDVRLQTLSSERQSLISEVKQLKLQLEEERTRKKSGLHNSHNGPTNGSDSDSDSFEHQRETSKLVADYKFRASKAEQDVLTLQATVARLESQVIRYKSAMEQAEKMEDELKCDRRKLQREAREAQSRVEELETENNHLNKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815104;
- 90% Identity
- iTF_00815104;
- 80% Identity
- -