Hbet012852.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- lrrfip2
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000082.1:2389654-2392951[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-99 4.9e-94 319.0 19.1 1 300 115 416 115 416 0.95 2 3 0.02 6e+03 0.2 4.4 120 171 414 465 413 472 0.88 3 3 0.25 7.8e+04 -3.4 6.7 8 37 449 480 434 491 0.43
Sequence Information
- Coding Sequence
- ATGGCCGAAGTGGATGCCCAACCGGTGTGGTCTGATCAGCAGCAGAACAGAACCGACGACAGCAGCGATAAAGAATTCACCGATGGAGATATAGACTTTTCTGATGAAGACGAAGACGAGGACAAAACTCAATGCCTCCCCAAAGGGGGCGTCTCTAAAATACCTTGCCACGAAGCTGTGAACAACGGCATTCATGATGTATCAAATGAAGATGACGACGAAGTGCTACTGCGACGCAAAGCATCAGTCGGCAATCCCAACGCGGCCAATGGAAACTCCATGTCTGAGAGTGGAGACGAAGTCACCAGCATAGTCGGCATACTCGGAAAGGATCACGATAAAGCAGAAGCAAGATTGGCTGCCCGTCGACAAGCACGTGCTGAAGCTCGTGAGATTCGTATGCGAGAAATTGAAAGACAACAGAAGGAACAAGATGAAAACGCTGATCGAGCATACGATATGTATTCTGAAACCTATAATCGTCCTTCTCGAGTTGCTGGAGGAACTCCAAACGCAGGTGCCGGAAGTAGGATATCATCTACAGGGTCTTTTCCCACTAATTCATATCATTCATCTAGACGGAGTTCTGAAGATTCATTGGAAGAAATGGGCAGCATCAGGGACTTGAGGCATGAGCTTAAAGAAGTTGAAGAAAAATTCCGCAAAGCTATGATTTTGAATGCTCAATTAGACAATGACAAAGCGTCGTTTTCATATCAACTTGaacttttaaaagataaattagaaGACTTCCAAGAACTGTACACGCAACTTCAGAGAGAACATAAAGATAAATGTCGTGCGCACGATAGCATAGCTCGAGAGTTCCGTCTCACAAAAGAAGAATTGGACCGATGCGTTGCAGCGGTGGCGTTGCGAGATAGATGCATTCAAGAAGCTGGACTAGAATTAGTTGCGATAGAAGGCGAAGACGGCGATGGTCCAGGAGCCGCTCTCGTTTCGCGTGCGGGTCGTGAAGCACTAGAAGCCGCCGGTCAAGGAACTTTAgATGTGCGGTTGCAAACTTTAAGTTCAGAGAGACAAGCGTTGATTTCCGAAgtcaaacaattaaaattacagTTGGAAGAAGAACGAACTAGGAAAAAAAGTGGACTTCATAATTCTCATAATGGTCCGACAAATGGTTCAGACAGTGACTCTGATTCTTTCGAACATCAAAGAGAAACATCAAAATTGGTAGCAGATTATAAATTCAGAGCTTCTAAAGCTGAACAAGATGTATTAACTCTCCAAGCGACTGTCGCTCGTTTGGAAAGTCAAGTTATAAGATATAAAAGTGCCATGGAACAAGCTGAAAAAATGGAAGATGAACTCAAATGTGATCGTAGAAAACTTCAACGGGAGGCACGCGAAGCTCAAAGTAGAGTCGAAGAGTTGGAAACGGAAAACAATCATCTCAACAAGCGTTTGGACAAACTAAAAAATGCTAAATCCGCTTTGCTCAAGGAACTTTGA
- Protein Sequence
- MAEVDAQPVWSDQQQNRTDDSSDKEFTDGDIDFSDEDEDEDKTQCLPKGGVSKIPCHEAVNNGIHDVSNEDDDEVLLRRKASVGNPNAANGNSMSESGDEVTSIVGILGKDHDKAEARLAARRQARAEAREIRMREIERQQKEQDENADRAYDMYSETYNRPSRVAGGTPNAGAGSRISSTGSFPTNSYHSSRRSSEDSLEEMGSIRDLRHELKEVEEKFRKAMILNAQLDNDKASFSYQLELLKDKLEDFQELYTQLQREHKDKCRAHDSIAREFRLTKEELDRCVAAVALRDRCIQEAGLELVAIEGEDGDGPGAALVSRAGREALEAAGQGTLDVRLQTLSSERQALISEVKQLKLQLEEERTRKKSGLHNSHNGPTNGSDSDSDSFEHQRETSKLVADYKFRASKAEQDVLTLQATVARLESQVIRYKSAMEQAEKMEDELKCDRRKLQREAREAQSRVEELETENNHLNKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815807; iTF_00158052;
- 90% Identity
- iTF_00815807;
- 80% Identity
- -