Hbet010402.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000060.1:57757-59979[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-11 5.8e-07 33.1 0.0 4 39 193 229 190 233 0.90 2 4 3.3e-12 1.2e-07 35.2 0.1 2 39 245 282 244 285 0.93 3 4 4.5e-16 1.7e-11 47.6 0.0 2 45 300 344 299 344 0.97 4 4 7.1e-18 2.7e-13 53.3 0.0 1 42 351 393 351 394 0.95
Sequence Information
- Coding Sequence
- ATGGTGATGACCGGACATTCAAAATCTCCAGAATCATCTCCAAACATGTTAGACGGAGAGAAAACAAACGGATCAGCGATGCATACGCTAGCACCAGCAAGGTCACCCAATCAACCGTTACTTCATCACTTACAGAATGCGAATAGTAACGGGGATGTTATTAATGGTATCGAAGCTGAATATCCGATACCGGTACCATTTGCACCTTCAGCGACACCAGTGCCAGTTGTTATGGATTCAAATGATTCAATGTTACGGACAGATGGCTTATGCACcacaaattttaaagaaaagtttgaaaCTTTAAGATCATTAGACCAGCAATCTTCATTAAATGCAGAGAAAAATGGACAAGACTTGAGCCCGTTGTCGAAATTAGACTCAAATCCATCTATGATGATCACATCGGAATTGTTAAGATTAATCCCTGGAGAAAACGACACAAATGATGAAGataCACTattcaatgaagaaaataattgcaGCTTCAATGAAATGTCAACGGATGAAATGGGACAGTTTGGTAGGAACAATCACTGTGGAATTAACAACGGACCTAAGACGTGGTCGCAACAGGATATGGAGAATGCTTTGGATGCTTTGCGCAATCACAATATGAGCTTAACCAAAgCATCTTCAACATTTGGAATACCTTCTACGACATTATGGCAACGAGCTCATAGACTTGGTATCGATACTCCAAAAAAGGAAGGACCTTCAAAATCATGGAGTGAAGGAAATTTACACAATGCTTTACAAGCATTAAGAACAGGAACAATATCAGCCAATAAAGCTAGCAAGGCATATGgtATTCCGAGCAGTACGTTGTATAAAATAGCTAGACGAGAGGGAATTCGATTAGCAGCTCCATTTAATGCTGCGCCTACTGCATGGAGACCAGGAGACTTGGAAAGGGCCCTACATTCTATTAGATCTGGTCATTCTTCAGTTCAAAGGGCATCTACGGAATTTGGAATTCCGACAGgtACATTATATGGACGATGTAAAAGAGAAGGCATAGAATTGTCAAGATCAAACCCTACTCCTTGGTCGGAAGATGCAATGGGAGAAGCTCTGGAAGCTGTTCGaataggGCAAATGTCAATAAATCAAGCAGCCATCCATTACAATTTACCATATTCATCATTATATGGAAGATTCAAAAGGTGTAAATATGAAGGAGATACTGGGAACAACGCAGAATCTCCTGTTCCAGTACATACGATTCAGGAACTTCATTCGGCTCAGCAGATGACACAAACTCCTATTCTGAACACTAATCATCATGACCATAATATGGCACATGATAACTCATCACGACATCTCTATTCTCCTTACCAGCATCATTCAGTGTCGATACCACCTTCAATGCATGAACATTCCGAACCCACTAATGTTTCGCATAACAATCAAGATTGTGTTTCCATCAGTTGA
- Protein Sequence
- MVMTGHSKSPESSPNMLDGEKTNGSAMHTLAPARSPNQPLLHHLQNANSNGDVINGIEAEYPIPVPFAPSATPVPVVMDSNDSMLRTDGLCTTNFKEKFETLRSLDQQSSLNAEKNGQDLSPLSKLDSNPSMMITSELLRLIPGENDTNDEDTLFNEENNCSFNEMSTDEMGQFGRNNHCGINNGPKTWSQQDMENALDALRNHNMSLTKASSTFGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHNALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALHSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYEGDTGNNAESPVPVHTIQELHSAQQMTQTPILNTNHHDHNMAHDNSSRHLYSPYQHHSVSIPPSMHEHSEPTNVSHNNQDCVSIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815723; iTF_00157962;
- 90% Identity
- iTF_00815723;
- 80% Identity
- -