Agra010882.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000026.1:8926388-8929527[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-11 5.3e-08 33.1 0.0 4 39 193 229 190 233 0.90 2 4 4.5e-12 1.1e-08 35.2 0.1 2 39 245 282 244 285 0.93 3 4 6.2e-16 1.6e-12 47.5 0.0 2 45 300 344 299 344 0.97 4 4 9.8e-18 2.5e-14 53.3 0.0 1 42 351 393 351 394 0.95
Sequence Information
- Coding Sequence
- ATGACTGGTCGTTCGGATTCGCCGGACTCGTCACCGAATTCTTCAGACGGTGAAAAGACAAACGGTGGAGCCATGCACACTTTAGCACCGGCAAGATCTCCCAATCAACCACTTTTACATCATTTACAGaATGCTGGTAGTAATGGGGATGTAATAAATGGCATGGAAGCAGAATATCCATTGCCCGTTCCGTTGGCTCCGTCTGCAACACCCGTGCAAGTTACTTTGGATCCAAACGATTCTATGCTTCGCCTCGATAATTCATTTAGCAATGGCATTTCGACAAATTTTAAAGAAAAGTTTGAGACGTTGAGGTCATTAGATCACCAGTCGTCATTGAACGACAAAAGTATACAAGACTTGAGCATTTTTTCGAAAATGGACTCCAATCCGTCGATGATGATCACGTCTGAACTATTGCGGCTGATTCCTGGCGAAAATGACACGAACGACGAAGatATCCTCAACGAAGAGAACAATTGTAGCTTCAACGAAATGTCTACTGACGAAATGGGACACTACGGACGGATCAATCACTGCGGTATTAATAACGGACCGAAAACGTGGTCTCAGCAAGATATGGAAAATGCTTTGGACGCTTTACGAAATCATAACATGAGTTTgacaaaaGCATCATCAACGTTTGGTATTCCATCAACAACACTGTGGCAAAGGGCGCATAGGCTTGGAATTGATACACCTAAAAAAGAAGGACCATCAAAATCATGGAGTGAAGGAAATTTACATAATGCATTGCAAGCCTTGAGAACAGGAACTATTTCAGCCAATAAAGCTAGCAAAGCTTATGGTATTCCTAGTAGTACATTGTATAAAATAGCGAGACGTGAAGGTATACGATTAGCAGCCCCATTTAATGCAGCACCTACTGCTTGGAGACCTGGAGACTTAGAGAGAGCTCTTCACTCGATTAGATCAGGTCACTCTTCAGTGCAGAGGGCTTCAACTGAATTTGGTATTCCTAcagGAACTTTATATGGAAGATGTAAAAGGGAAGGTATAGAATTGTCTCGATCTAATCCGACACCGTGGTCCGAGGATGCTATGGGAGAAGCTTTGGAAGCTGTAAGAATTGGACAAATGTCAATTAACCAAGCGGCCATTCATTACAACTTACCATATTCATCACTGTACGGTAGATTTAAGCGATGTAAATACGAAGGCGACATGGTAAATAATGCGGAACCTCCGCTTCAAGTGCACCCGATCCACGACCTGCACGCATCGCAACAGCAGATGGCTCAAACACCATCTCTGAACAGTGCCGTGCACGATCACAGTATGGCGCACGATAATTCGTCGCGGCATCCGTATTCCGTGTACCATCATCACTCTCTCTCGATGCCGACGTCGATGCACGAACACTCTGAGCCCAATAACGTCGCTCATAGCAATCAAGATTGTGTTTCTATCAGTTGA
- Protein Sequence
- MTGRSDSPDSSPNSSDGEKTNGGAMHTLAPARSPNQPLLHHLQNAGSNGDVINGMEAEYPLPVPLAPSATPVQVTLDPNDSMLRLDNSFSNGISTNFKEKFETLRSLDHQSSLNDKSIQDLSIFSKMDSNPSMMITSELLRLIPGENDTNDEDILNEENNCSFNEMSTDEMGHYGRINHCGINNGPKTWSQQDMENALDALRNHNMSLTKASSTFGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHNALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALHSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYEGDMVNNAEPPLQVHPIHDLHASQQQMAQTPSLNSAVHDHSMAHDNSSRHPYSVYHHHSLSMPTSMHEHSEPNNVAHSNQDCVSIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815021;
- 90% Identity
- -
- 80% Identity
- -