Hten002576.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000076.1:751771-754565[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-11 3.6e-08 33.0 0.0 4 39 219 255 216 259 0.90 2 4 8.3e-12 7.7e-09 35.1 0.1 2 39 271 308 270 311 0.93 3 4 1.1e-15 1.1e-12 47.5 0.0 2 45 326 370 325 370 0.97 4 4 1.8e-17 1.7e-14 53.2 0.0 1 42 377 419 377 420 0.95
Sequence Information
- Coding Sequence
- ATGGTGGCCCCCGGTGGTGAGTGGGAGCTTCGGCGAACGGAGCTTTCGGAAAGTCTGGGGTATTCTATTGGTGTTATGGTGATGACCGGACATTCAAAATCTCCAGAATCATCTCCAAACATGTTGGACGGGGAGAAAACGAACGGATCAGCGATGCATACGTTAGCACCAGCTAGaTTGGACattgtcaaatatttaaaaatgttaatacaGAATGCAAACAGTAATGGGGATGTTATTAATGGTATCGAAGCAGAATATCCAATACCAGTACCATTTGCACCTTCAGCGACTCCAGTACCAGTTGTTATGGATTCAAACGATTCAATGCTACGGATAGATGGTTTATGCACgacaaattttaaagaaaagttTGAAACTTTAAGATCATTAGACCAACAATCTTCATTAAACGCAGAAAAAAATGGACAAGACTTGAGCCCGTTGTCAAAATTAGACTCAAATCCATCTATGATGATCACATCGGAATTGCTAAGATTAATCCCTGGAGAAAACGACACAAATGATGAAGataCCCTAttcaatgaagaaaataattgcaGCTTCAATGAAATGTCAACGGATGAGATGGGCCAGTTTGGTAGAAACAATCACTGTGGAATTAACAACGGACCCAAGACGTGGTCTCAACAGGATATGGAGAATGCTTTGGATGCTTTGCGCAATCACAATATGAGCTTAACCAAAGCATCATCAACATTTGGAATACCTTCTACAACATTATGGCAACGTGCTCATAGACTTGGTATCGATACTCCAAAAAAGGAAGGACCATCAAAATCATGGAGCGAAGGAAATTTACACAATGCTTTACAAGCACTAAGAACAGGAACAATATCAGCCAATAAAGCTAGCAAAGCATATGgtATTCCAAGCAGCACGTTGTATAAAATAGCTAGACGAGAAGGAATCCGATTAGCAGCTCCGTTTAATGCAGCACCTACTGCGTGGAGACCAGGAGACTTGGAAAGGGCCCTACATTCCATTAGATCTGGTCATTCTTCAGTTCAAAGAGCATCTACGGAATTTGGAATTCCTACAGGTACATTATATGGACGATGTAAAAGAGAAGGTATAGAATTGTCAAGATCAAACCCTACTCCTTGGTCGGAAGATGCAATGGGAGAAGCTCTCGAAGCTGTTCGaatagGGCAAATGTCAATAAATCAAGCAGCCATCCATTACAATTTACCATATTCATCATTATACGGAAGATTCAAAAGGTGTAAATATGAAGGAGATACTGGAAACAACGCAGAATCCCCAGTTCCAGTACACACGATTCAGGAACTTCATTCGGCTCAGCAGATGACACAAACTCCTATTCTGAACACAAATCATCATGACCATAATATGGCACATGATAACTCATCACGACATCTTTATTCTCCTTACCAGCATCATTCAGTGTCGATACCACCTTCAATGCATGAACATTCCGAACCCACTAATGTTTCGCATAACAATCAAGATTGCGTTTCTATCAGTTGA
- Protein Sequence
- MVAPGGEWELRRTELSESLGYSIGVMVMTGHSKSPESSPNMLDGEKTNGSAMHTLAPARLDIVKYLKMLIQNANSNGDVINGIEAEYPIPVPFAPSATPVPVVMDSNDSMLRIDGLCTTNFKEKFETLRSLDQQSSLNAEKNGQDLSPLSKLDSNPSMMITSELLRLIPGENDTNDEDTLFNEENNCSFNEMSTDEMGQFGRNNHCGINNGPKTWSQQDMENALDALRNHNMSLTKASSTFGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHNALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALHSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYEGDTGNNAESPVPVHTIQELHSAQQMTQTPILNTNHHDHNMAHDNSSRHLYSPYQHHSVSIPPSMHEHSEPTNVSHNNQDCVSIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815021;
- 90% Identity
- iTF_00815021;
- 80% Identity
- -