Basic Information

Insect: Horisme vitalbata
Gene Symbol: -
Assembly: GCA_951804965.1
Location: OX638088.1:34955575-34958405[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.55 4.6e+03 -1.3 0.3 24 38 42 57 37 61 0.75

2 14 0.0012 10 7.2 0.1 21 52 216 246 207 248 0.79

3 14 0.086 7.1e+02 1.3 0.1 21 44 243 266 241 274 0.80

4 14 0.61 5e+03 -1.4 0.0 23 48 272 297 267 302 0.82

5 14 0.19 1.6e+03 0.2 0.0 23 52 301 330 290 332 0.83

6 14 0.0028 23 6.0 0.1 21 46 355 380 345 387 0.81

7 14 0.089 7.4e+02 1.2 0.2 21 43 383 405 380 410 0.83

8 14 0.0013 11 7.1 0.0 22 44 413 435 406 441 0.85

9 14 0.32 2.7e+03 -0.5 0.1 22 43 469 490 460 494 0.70

10 14 0.098 8.2e+02 1.1 0.2 21 32 496 507 490 522 0.77

11 14 3.2e-05 0.26 12.3 0.4 16 51 519 554 513 555 0.84

12 14 0.00014 1.2 10.2 0.2 21 52 552 583 549 584 0.90

13 14 0.0014 12 7.0 0.1 22 52 581 611 578 611 0.87

14 14 0.0011 9.2 7.3 0.1 21 46 608 633 606 638 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.55	4.6e+03	-1.3	0.3	24	38	42	57	37	61	0.75
2	14	0.0012	10	7.2	0.1	21	52	216	246	207	248	0.79
3	14	0.086	7.1e+02	1.3	0.1	21	44	243	266	241	274	0.80
4	14	0.61	5e+03	-1.4	0.0	23	48	272	297	267	302	0.82
5	14	0.19	1.6e+03	0.2	0.0	23	52	301	330	290	332	0.83
6	14	0.0028	23	6.0	0.1	21	46	355	380	345	387	0.81
7	14	0.089	7.4e+02	1.2	0.2	21	43	383	405	380	410	0.83
8	14	0.0013	11	7.1	0.0	22	44	413	435	406	441	0.85
9	14	0.32	2.7e+03	-0.5	0.1	22	43	469	490	460	494	0.70
10	14	0.098	8.2e+02	1.1	0.2	21	32	496	507	490	522	0.77
11	14	3.2e-05	0.26	12.3	0.4	16	51	519	554	513	555	0.84
12	14	0.00014	1.2	10.2	0.2	21	52	552	583	549	584	0.90
13	14	0.0014	12	7.0	0.1	22	52	581	611	578	611	0.87
14	14	0.0011	9.2	7.3	0.1	21	46	608	633	606	638	0.89

Sequence Information

Coding Sequence: ATGCATCCTTCTATGTGTAGAGTTTGTTTGTGCACCAATATGAAAATGCATCACATTGGAAATACTCATAGTGAAATGTTCGAAAGGTTTACAGGAACCCTGCTCAGCACAGGTGACAACAGGCCTACTACTGCCTGCTTCATTTGTACCGCACAGCTGCAGAGATGCCGGAGATTCTATGACATGTGCCAAAAAGCTGAAAAAATCTGCAAGGATCTTTTTCACAACAACCAACAGGTAACCCAGGAAGTGCTTGCTAAGCATAATCTAGGATGGATACACAATCTGACAATGACCCCTGTGAAGTACATGTCCACAGATGATGATGTTAACAACGAATTAGAAACTCAGGTGAAAGTAGAAGACACATCAGATGATGAATCACTGATGCACACTGGCTTCACAACGTTTGTTGAGGATGTCCAAACTGAAGCCAGTTTGCTAAATAGTGAGAAGGCAGATTTAAATGAAAGTAAGCATATTCCTGCCTCCCAAGAATGCAGTAAAACATTCAAAACTAAAGCAAAGCCGGAGAAACATAAGCTCACCCATACAAAAACATATTACTGCAGTTTCTGCAGTCAAACATTCACCAAAAAAAGGGTCCTAAAAATACATATCAAAAGCCATAAGACTCAAAATGAAAGTAAACAAAATGTCTGTAATATTTGTAACAAGACATTTGCACAAACATCCACGTTTAAAAGGCATTTGCAAATACATACTGGTGAAAAACCACATTCCTGCAGCATATGCAACGAATCATTCAGCCGGATGCACTCTTTGAAAATTCACATGCTGATTCACACTGGACAAATGCCCACTTGTGATACTTGCAGTAAAAGCTTTTCTACAAAGAGCGTTCTCACAAGACACATTATGCAAAAACACTCTGGTGGTAAGCCATTTGCTTGCAAAGTTTGCAATAAAGCATTTGCTGTAAAAGATGGTTTGAGAGCTCACATGAAGATTCATACAGGCGATAAGCCATTCATCTGCAGTACATGTGGTAAATCTTTTGTCGACAGCAGTCAACTAAAAGTGCACATAAGAGTGCATTCCGGAGAAAGACCACACACTtgtaaaatttgcaataagtcaTTTACTCAGTTAACCATTTTGAAAAGTCACATGCTGATACACACCGGAGAAAAGCCATACAATTGCAGCATATGCCAAAAATCATTTAGGCATAGAACTACTTTAGCATATCACACTCAACAGCATGGCACTGGCGATGAGCCATTCACATGCCCCATTTGCAGCACAGGATTCACTCTGAAAACTCTTCTGCGGAAACACATGGCAACACATACAGATGAGAGCTCGCATGTATGCAAGATatgtaaaaaatcatttattcatatcaTTTGTCTTAAAAAGCACATGAAGATACATACTGGAGAAAGACACTACACATGCAATATATGCGGAAAATCATTTATTCGGAACACTTGTTTAAAAAATCATATGAAAACTCATACCGGAGAGAAGCCACATACATGCGATGTTTGTAGTAAATCGTTTGCCTTGAATTCCACTCTAGCAAAACATCGAAGAATACATACCGGCGAAAAACCACATGCCTGTAACATATGCCAGAAACCGTTCAGCCTGAGCAGTGCACTGCGGAGGCACCTCAAGATACACACGGGAGAGAAGCCATACTCCTGCACCGTATGCAACAAACACTTCATTGAGAGCAGTGAGTTAAGGCGCCACATGAACATACACACCGAGAATAAACCACATTCCTGCAGCACATGCAATAAATCATTCCGGGATACGAAATCTCTGAGAACTCATATTAGACTGCACACTGGGGAAAAGCCTTATACATGCAATGTATGTGCCAAATCATTCACACAAAGTAGCAGTCTCACAACACATATTAAGAGGATTCATAGTGAAGACAAACTATGTAGCTGTAATGTATGCGGCAGATCATTCACTGAAAACAGCATGTTGATTAAGCATATGAGAATTCACTCTgaagaaaaagtaaaataa
Protein Sequence: MHPSMCRVCLCTNMKMHHIGNTHSEMFERFTGTLLSTGDNRPTTACFICTAQLQRCRRFYDMCQKAEKICKDLFHNNQQVTQEVLAKHNLGWIHNLTMTPVKYMSTDDDVNNELETQVKVEDTSDDESLMHTGFTTFVEDVQTEASLLNSEKADLNESKHIPASQECSKTFKTKAKPEKHKLTHTKTYYCSFCSQTFTKKRVLKIHIKSHKTQNESKQNVCNICNKTFAQTSTFKRHLQIHTGEKPHSCSICNESFSRMHSLKIHMLIHTGQMPTCDTCSKSFSTKSVLTRHIMQKHSGGKPFACKVCNKAFAVKDGLRAHMKIHTGDKPFICSTCGKSFVDSSQLKVHIRVHSGERPHTCKICNKSFTQLTILKSHMLIHTGEKPYNCSICQKSFRHRTTLAYHTQQHGTGDEPFTCPICSTGFTLKTLLRKHMATHTDESSHVCKICKKSFIHIICLKKHMKIHTGERHYTCNICGKSFIRNTCLKNHMKTHTGEKPHTCDVCSKSFALNSTLAKHRRIHTGEKPHACNICQKPFSLSSALRRHLKIHTGEKPYSCTVCNKHFIESSELRRHMNIHTENKPHSCSTCNKSFRDTKSLRTHIRLHTGEKPYTCNVCAKSFTQSSSLTTHIKRIHSEDKLCSCNVCGRSFTENSMLIKHMRIHSEEKVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811234;
90% Identity: iTF_00811234;
80% Identity: iTF_00811234;