Hvit013187.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- Prdm9
- Assembly
- GCA_951804965.1
- Location
- OX638094.1:2939522-2946209[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.6 1.3e+04 -2.8 0.0 37 46 398 407 395 416 0.73 2 8 0.086 7.1e+02 1.3 0.0 21 44 427 450 421 454 0.85 3 8 0.00094 7.8 7.6 0.0 21 45 455 479 450 482 0.91 4 8 0.0072 60 4.7 0.0 21 46 483 508 479 515 0.85 5 8 0.38 3.1e+03 -0.8 0.1 21 43 511 533 507 536 0.75 6 8 0.0049 41 5.3 0.0 20 46 538 564 528 570 0.83 7 8 2.9e-05 0.24 12.4 0.0 21 46 567 592 563 598 0.86 8 8 0.077 6.4e+02 1.4 0.1 21 46 595 620 591 626 0.83
Sequence Information
- Coding Sequence
- ATGACACAGCGTAGTTTGCGGCAGCGGCCGCGGATAAGCTACTACGAGCCAGAAGAACCAGATTTAGATGAATATGTGTtttgtgAGAAATGTGGAGATTACGTATACGAGTACTGTTCCATACATGGACCCCTACTAGTCATACCAGATAACAAGGTTCCCGCCAAACCCGATGTCCCATGGTTCGTCCCTCGTGCAGCCCTCACTATTCCCGACACTTTTCTACACATCCATTATTCCATTATACCAGATGGAGGGCTGGGAGTGTTTTCATCAATGACGCTACCATCTGGGGTGCGGTTTGGACCGTATATTGGACAGCGTACTGACCTAGTCGAGTCCGCCTACTGTTGGCAGATTTACGACAAAAACCGCAAGCCGCTTCACTGCGTGGACGCAGCTGACGCTAACAAGTCTAATTGGATGCGCTACGTGAACTGCGCAAGGCACTGGCAGGAACAGAACCTTGTGGCGTACCAGTACCAGGGGGAGTTGTACTATAGAACGATCAAAATAATACCTCGCTTTACGGAGCTCATGGTATTCTACGGCAGTGAATTTGCGTGTGAACTGGACGTGGACCTCGGGAACTACAACTCACCGATAGGATACGCGCAAAAATTCGGTGCACCGATCGTTAAGAAACGTAAACCCAATGTTGACGACACGAAAATGCATGGAGAAACTAAACCAGCAAGCGCCGAGACTGCTAACATACTAACAACAGATGAAGTAAAACTGACTTCAATAGTTGAAGATTTGGAGACTGCTATGAAACAAAGCTAcgacaaaaataaaatgcctAAACAAACAATCAATACTGAAGCCAAAAACagcataacaaataaaaataataaagtcaaAAAGACCTTTGCAGCTaacaagaaagaaaaatataaattcgtcacaaagaaaaatataaattctaaaAAACAGCAGACAAGACAGAACAACACTTCAATAGTAACATCAGATAcacaaaaaatcttaaaaccAGAAACCAACACTAGCAACAAAACAAATGGCTTAGACCCGTATTTCTATTGCAACGACTGCAACAAGAGATGTGTATCTAAGAAAGATCTGCAAAGGCACTTCAGGTTTCATGATTTAGAACGGGCTTATGAGTGTGATATTTGTAAATTAAGGTACATTTCAATACATGATTTAAATCAACATAATAGGATACACTCAAAAGAATTGCGATATCACTGCGAAATATGCGACAAAAAATTCACTCGAAGCGGTTTTTTAGAAATACATATGAGAACTCACACAGGAGAAAAGCCATATCACTGTCAAATATGTGACAAAAAATTCACTCGAAGTGGttcattaaaaatacatatgaCAACTCACACAGGAGAAAAGCCATATCACTGCGAAATATGCGACAAAAAATTCATTGAAAGTAGTAATTTGAAAAAGCATCTGAGAACTCACACAGGAGAAAAGCCATATCACTGCGAAATATGCGACAAAAAATTCACTCAAAGTGGTTCTTTAGAAATACATCTGAGAACTCACACAGGAGAAAAGCCATATCACTGCGAAATATGCGACAAAAAATTCACTGTAAGTGGTTCTTTATATAAACATAAGAGAACTCACACAGGAGAAAAGCCATATCACTGCGAAATATGCGACAAAAAATTCACTCAAAGTGGTTCTTTAGAAATACATCTGAGAACTCACACAGGAGAAAAGCCATATCACTGCGAAATATGctacaaaaaattcaataaaagtggtaatttgaaaattcatctgaGAACTCACACAGGAGAAAAGCCATATCACTGCGAAATATGCGACAAAAAATTTACCTACACAGCTCAATTGAAGTCACATCTGCAAACCCACATCCACGCGCGAGCCGCTTGA
- Protein Sequence
- MTQRSLRQRPRISYYEPEEPDLDEYVFCEKCGDYVYEYCSIHGPLLVIPDNKVPAKPDVPWFVPRAALTIPDTFLHIHYSIIPDGGLGVFSSMTLPSGVRFGPYIGQRTDLVESAYCWQIYDKNRKPLHCVDAADANKSNWMRYVNCARHWQEQNLVAYQYQGELYYRTIKIIPRFTELMVFYGSEFACELDVDLGNYNSPIGYAQKFGAPIVKKRKPNVDDTKMHGETKPASAETANILTTDEVKLTSIVEDLETAMKQSYDKNKMPKQTINTEAKNSITNKNNKVKKTFAANKKEKYKFVTKKNINSKKQQTRQNNTSIVTSDTQKILKPETNTSNKTNGLDPYFYCNDCNKRCVSKKDLQRHFRFHDLERAYECDICKLRYISIHDLNQHNRIHSKELRYHCEICDKKFTRSGFLEIHMRTHTGEKPYHCQICDKKFTRSGSLKIHMTTHTGEKPYHCEICDKKFIESSNLKKHLRTHTGEKPYHCEICDKKFTQSGSLEIHLRTHTGEKPYHCEICDKKFTVSGSLYKHKRTHTGEKPYHCEICDKKFTQSGSLEIHLRTHTGEKPYHCEICYKKFNKSGNLKIHLRTHTGEKPYHCEICDKKFTYTAQLKSHLQTHIHARAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811263;
- 90% Identity
- iTF_00811263;
- 80% Identity
- iTF_00811263;