Hvit004440.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638089.1:27872780-27878766[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 1.4e-06 28.8 0.0 1 35 44 79 44 86 0.92
Sequence Information
- Coding Sequence
- ATGGTAAAGATAATAAAGGTtaagGCTCGTATGCTGGAGAACACCCAAGCCTGGATGGGGGCGGCGTCGACGTCCACTGCATTGGCAGACTACCACGGTCATGCCCTCAAGCTGAAAGCGCCGAGATGGACCGATGGCCAGCTGCAAGAAGCTATCCAGGCTGTTGTCACCCAACGGATGCGGTTCACGCAAGCTGCAACACACTACGCCATTCCCAAAGGAACCCTTTACGATAACATACTAGGAAAGTCTCGAAGAATGGCAGTTTTAGACGATGCTGGTCTTACTGCTGACGAGGAACGATCAGTATTAGACTACTGCTGTTACACCAGTGTCTCACCTTACAATAGAAGGACTAAAAAGTCCCTTAAAGAAGTTCTAACTTTTGTGGAAAAGCTTAGGCAAGCTAGGGACCCAGGATTCACGTTTGTAGGACTTACAGGCTTCAGGTGGTGGTGGGCGTTTTGTAAAAAACATTCCATTGTGTCTTTGTATTATGAGGGGGCAGCCAAAAAAGGTGCTAAACTAGATAAAGTTAAGGCTGAGAACACTGAGTATGATGAATCGTAA
- Protein Sequence
- MVKIIKVKARMLENTQAWMGAASTSTALADYHGHALKLKAPRWTDGQLQEAIQAVVTQRMRFTQAATHYAIPKGTLYDNILGKSRRMAVLDDAGLTADEERSVLDYCCYTSVSPYNRRTKKSLKEVLTFVEKLRQARDPGFTFVGLTGFRWWWAFCKKHSIVSLYYEGAAKKGAKLDKVKAENTEYDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182665; iTF_00638580; iTF_01219715; iTF_00737412; iTF_01529125; iTF_01099782; iTF_00267116; iTF_00663020; iTF_00662164; iTF_00632698; iTF_00661212; iTF_00686272; iTF_01335863; iTF_01428986; iTF_01509536; iTF_00377039; iTF_00856550; iTF_01171400; iTF_00119543; iTF_00361561; iTF_00318043;
- 90% Identity
- -
- 80% Identity
- -