Prub000540.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754905.1:1538745-1541037[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-10 1.1e-06 28.7 0.0 1 35 34 69 34 74 0.92
Sequence Information
- Coding Sequence
- ATGCTGGAGAACACTCAAGCTTGGATGGGAGCTGCTTCCACGTCCACTGCGCTGGCAGAGTACCACGGTCTCGCCGTCAAGCTGAAAGCACCAAGATGGACGGACGGGCAGCTGCAAGAAGCCATCCAGGCTGTTGTCACACAACGAATGCGCTTCACCCAAGCTGCGACACACTACGCCATACCAAAAGGAACCTTGTACGACAATATATTAGGGAAATCAAAACGGATGGCAGTTCTTGATGATGCTGGTTTGACAGTTGATGAAGAAAAAACCATCTTAGATTACTGTTGCTACACCAGTGTCTCGCCGTACAATAGGAGAACCAAAAAGTCGCTAAAGGAGGTCCTTGAGTTCGTTGTAAAGCTCAGACGTGCCAGGGATCCTGGCTTCACGTTCGTAGGACTCACGGGGTTTAGATGGTGGTGGGCGTTCTGTAAAAAGAATTCAATTGTGTCATTGTACTACGAGGAGTCGGGTAGAACGAAGAGGTCTAGATCGGCTAAAATTAAATCAGAGATAAATGCAGACGACGATGAGGCTCGTTTTCCGGAACTAAACTGA
- Protein Sequence
- MLENTQAWMGAASTSTALAEYHGLAVKLKAPRWTDGQLQEAIQAVVTQRMRFTQAATHYAIPKGTLYDNILGKSKRMAVLDDAGLTVDEEKTILDYCCYTSVSPYNRRTKKSLKEVLEFVVKLRRARDPGFTFVGLTGFRWWWAFCKKNSIVSLYYEESGRTKRSRSAKIKSEINADDDEARFPELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810945;
- 90% Identity
- -
- 80% Identity
- -