Ader013581.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388257.1:1558650-1560241[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-09 8.4e-06 25.5 0.0 3 35 36 69 34 74 0.91
Sequence Information
- Coding Sequence
- ATGTTGGAGAACACCCAGGCTTGGATGGGAGCAGCTTCTACATCCACCGCGCTGGCAGACTACCACGGTCTCGCTCTCAAGCTGAAAGCACCAAGATGGACCGACAGCCAGCTGCAAGAAGCTATCCAAGCCGTCGTCACGCAACGGATGCGATTCACACAAGCTTCGACACACTACGCAATCCCTAAAGGAACGCTGTACGATAACATTTTAGGAAAATCGAAACGTATGGCCGTTCTTGACGACGCTGGGCTAACAGCTGATGAAGAACGCGCTATCTTAGATTACTGCTGCTACACCAGCGTCTCACCATACAATAGGAGGACTAAAAAGTCGCTGAAAGAGGTTCTAGCGTTTGTTGAAAATCTCAGGCGCGCAAGAGACCCTGACTTCACGTTTGTAGGACTCACGGGCTTTAGGTGGTGGTGGGCTTTTTGTAAGAAGAATTCCATTGTTTCTCTGTACTACGAAGGCTCTGTCAAATCGAAGAGCTCTAGGCTGGGGAAAATAAAGTCGGAGATGAATGCTGACGATGATGAATCCAGCGAGTTCTGTATTTCCGAACATAACTAA
- Protein Sequence
- MLENTQAWMGAASTSTALADYHGLALKLKAPRWTDSQLQEAIQAVVTQRMRFTQASTHYAIPKGTLYDNILGKSKRMAVLDDAGLTADEERAILDYCCYTSVSPYNRRTKKSLKEVLAFVENLRRARDPDFTFVGLTGFRWWWAFCKKNSIVSLYYEGSVKSKSSRLGKIKSEMNADDDESSEFCISEHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810945;
- 90% Identity
- iTF_01099782;
- 80% Identity
- -